Chee How Teo posted a comment on discussion General Discussion

Dear author of CIRI-FULL, Good day! I am trying to use CIRI-FULL.jar for my circRNA analysis. I am facing problem with CIRI-FULL.jar Pipeline when I used the clean reads trimmed by cutadapt versionh 1.9.1 for CIRI-FULL analysis. The detail of the problem is given here: java -jar CIRI-full.jar Pipeline -1 Be96hpi-3-LDB10460_clean_L2_1.fq.gz -2 Be96hpi-3-LDB10460_clean_L2_2.fq.gz' -r reference.fna -a reference.gtf -t 8 -0 -o Be96hpi-3 -d Be96hpi-3 classpath = /home/umcentral18/Downloads/CIRI-full_v2_1//...