Cecilio Jimenes

Hi, I want to run BBMap_38.34 on a win10 (education) laptop 16GB RAM, i7 processor. I have java: java version "1.8.0_191" Java(TM) SE Runtime Environment (build 1.8.0_191-b12) Java HotSpot(TM) 64-Bit Server VM (build 25.191-b12, mixed mode) I attempeted to run bbmap with the following command: C:\bbamp\mapPacBio.sh -Xmx20g k=7 in=m54092_180523_205249.subreadsFQ.fastq ref=Moellerella_wisconsensis.fasta maxlen=1000 minlen=200 idtag ow int=f qin=33 out=Kurthiamapped1.sam minratio=0.15 ignorequality...