User Activity
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Posted
a comment
on
discussion Help
on
micro-read Copy Number Variant Regions
you are using an obsolete version. mrcanavar moved to github a long time ago: https://github.com/BilkentCompGen/mrcanavar it will output .dups.bed and .dels.bed that correspond to the CNV regions. http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail Virus-free. www.avg.com http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> On Sat, Oct 7, 2017...
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Posted
a comment
on
discussion Help
on
micro-read Fast Alignment Search Tool
yes, that is correct. Still, 35% mapping to repeatmasked genome is normal. The other...
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Posted
a comment
on
discussion Help
on
micro-read Fast Alignment Search Tool
Hi Michele In your previous email you seem to map to repeatmasked reference. If you...
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Modified
ticket #30
on
micro-read Fast Alignment Search Tool
uninitialized use of ret variable in Output.c
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Posted
a comment
on
ticket #30
on
micro-read Fast Alignment Search Tool
fixed in 2.6.1.0
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Posted
a comment
on
ticket #30
on
micro-read Fast Alignment Search Tool
Thanks Peter. These are not real bugs though. We'll fix them in the upcoming 3.0...
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Modified
ticket #14
on
micro-read Fast Alignment Search Tool
mrsfast: malloc(): memory corruption
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Modified
ticket #24
on
micro-read Fast Alignment Search Tool
Invalid SAM for alignment at end of reference
Personal Data
- Username:
- calkan
- Joined:
- 2009-04-28 02:12:13
Projects
This is a list of open source software projects that Can Alkan is associated with:
- Multiple Alignment Manipulator MaM processes and manipulates multiple sequence alignments. Last Updated:
- NovelSeq Novel sequence insertion detection Last Updated:
- SCALCE boosting Sequence Compression Algorithms using Locally Consistent Enco Last Updated:
- VariationHunter-CommonLaw Last Updated:
- di-base read Fast Alignment Search Tool Last Updated:
- micro-read Copy Number Variant Regions Last Updated:
- micro-read Fast Alignment Search Tool Last Updated:
- sirfast Mapper for Complete Genomics Last Updated: