Activity for Brendan MacLean

  • Brendan MacLean Brendan MacLean created ticket #3

    Some way to get a window count

  • Brendan MacLean Brendan MacLean committed [r11871]

    Skyline: Merged revision(s) 11869 from branches/skyline_4_1:

  • Brendan MacLean Brendan MacLean committed [r11870]

    Skyline: Revert unintended changes to Skyline.csproj

  • Brendan MacLean Brendan MacLean committed [r11869]

    Skyline: Fix PeptideSettingsUI handling for Sonar settings

  • Brendan MacLean Brendan MacLean committed [r11868]

    Skyline: Fix recent DLL dependency changes (VC14 and SQLite)

  • Brendan MacLean Brendan MacLean committed [r11852]

    Skyline: Rename ion mobility tutorial to be more obviously appealing to researchers interested in ion mobility

  • Brendan MacLean Brendan MacLean committed [r11848]

    Skyline: Fix names of new tutorials (second try - without renaming)

  • Brendan MacLean Brendan MacLean committed [r11843]

    Skyline: Fix file names for new small molecule tutorials

  • Brendan MacLean Brendan MacLean committed [r11785]

    Skyline: Visual tweaks to CalibrationForm (no font scaling, mouse centered zooming, 2-pixel selection line) and PasteDlg (white text on red background for errors)

  • Brendan MacLean Brendan MacLean committed [r11756]

    Skyline: Remove empty bin folder that gets cleaned and causes SVN problems

  • Brendan MacLean Brendan MacLean committed [r11737]

    Skyline: New button in ToolOptionsUI to reset all settings

  • Brendan MacLean Brendan MacLean committed [r11730]

    Skyline (4.1): Move Japanese OK and Cancel buttons to correct locations in Japanese

  • Brendan MacLean Brendan MacLean committed [r11720]

    Skyline: Merged revision(s) 11714 from branches/skyline_4_1:

  • Brendan MacLean Brendan MacLean committed [r11719]

    Skyline (3.6): Update 3.6 to provide upgrade notifications for 3.6 through 3.1 versions

  • Brendan MacLean Brendan MacLean committed [r11714]

    Skyline (4.1): Fix GraphChromatogram.DisplayTotals bug where certain transitions could be added twice

  • Brendan MacLean Brendan MacLean committed [r11713]

    Skyline: Merged revision(s) 11709-11711 from branches/skyline_4_1:

  • Brendan MacLean Brendan MacLean committed [r11712]

    Skyline (4.1): Final commit before releasing 4.1 (DO NOT MERGE)

  • Brendan MacLean Brendan MacLean committed [r11711]

    Skyline (4.1): More clean-up that can be merged to trunk preparing for 4.1 release

  • Brendan MacLean Brendan MacLean committed [r11709]

    Skyline (4.1): Remove use of Skyline-daily in the RESX files in preparation for a release

  • Brendan MacLean Brendan MacLean committed [r11708]

    Skyline: Merged revision(s) 11707 from branches/skyline_4_1:

  • Brendan MacLean Brendan MacLean committed [r11707]

    Skyline: Fix Chinese translation of polarity in --exp-polarity argument name

  • Brendan MacLean Brendan MacLean committed [r11706]

    Skyline: Merged revision(s) 11705 from branches/skyline_4_1:

  • Brendan MacLean Brendan MacLean committed [r11705]

    Skyline (4.1): Fix AreaCVHistogramTest for Japanese and Chinese

  • Brendan MacLean Brendan MacLean committed [r11703]

    Skyline (4.1): Integrate Chinese localization

  • Brendan MacLean Brendan MacLean committed [r11692]

    Skyline (4.1): Apply new Japanese localization

  • Brendan MacLean Brendan MacLean committed [r11675]

    Skyline: Merged revision(s) 11663-11665, 11671, 11674 from branches/skyline_4_1:

  • Brendan MacLean Brendan MacLean committed [r11674]

    Skyline (4.1): Attempt to fix TestSkylineCmd failures in nightly tests by doubling the process exit wait time to 20 seconds

  • Brendan MacLean Brendan MacLean committed [r11672]

    Skyline (4.1): Switch to the release icon for Nat to use with the TeamCity built SkylineTester

  • Brendan MacLean Brendan MacLean committed [r11667]

    Skyline: Tutorial updates to 3.7 and Windows 10 from Nat

  • Brendan MacLean Brendan MacLean committed [r11664]

    Skyline: Further reduce max transition count to pass all tests on 32-bit build

  • Brendan MacLean Brendan MacLean committed [r11663]

    Skyline: Reduce max transition count for 32-bit to keep from running out of memory trying to get to the maximum

  • Brendan MacLean Brendan MacLean committed [r11659]

    Skyline: Merged revision(s) 11649-11658 from branches/skyline_4_1:

  • Brendan MacLean Brendan MacLean committed [r11658]

    Skyline (4.1): Another attempt to fix MethodEditTutorialTest by using DocumentUI more

  • Brendan MacLean Brendan MacLean committed [r11657]

    Skyline (4.1): Attempt to fix DriftTimePredictorTutorialTest by changing y-coordinate to click.

  • Brendan MacLean Brendan MacLean committed [r11656]

    Skyline: Add test for consistency between MethodRefinementTutorialTest and the written tutorial

  • Brendan MacLean Brendan MacLean committed [r11655]

    Skyline: Japanese tutorials for DIA, Grouped Studies and Small Molecule

  • Brendan MacLean Brendan MacLean committed [r11635]

    Skyline: Branch for 4.1 release

  • Brendan MacLean Brendan MacLean committed [r11617]

    Skyline: Add diagnostic for failing perf test DriftTimePredictorTutorialTest

  • Brendan MacLean Brendan MacLean committed [r11606]

    Skyline: Attempt to fix DriftTimePredictorTutorialTest

  • Brendan MacLean Brendan MacLean committed [r11604]

    Skyline: Attempt to fix DriftTimePredictorTutorialTest

  • Brendan MacLean Brendan MacLean committed [r11587]

    Skyline: First draft of new DriftTimePredictorTutorialTest

  • Brendan MacLean Brendan MacLean committed [r11573]

    Skyline: Attempt to fix MethodEditTutorialTest and better reporting for failures

  • Brendan MacLean Brendan MacLean committed [r11572]

    Skyline: More MethodEditTutorialTest diagnostics for most common intermittent nightly failure

  • Brendan MacLean Brendan MacLean committed [r11570]

    Skyline: Update Skyline Drift Time Predictor Training tutorial with edits from John F.

  • Brendan MacLean Brendan MacLean committed [r11562]

    Skyline: New diagnostic information to try to understand MethodEditTutorial failure.

  • Brendan MacLean Brendan MacLean committed [r11560]

    Skyline: Attempt to fix multiple enumeration code inspection error not showing up on ReSharper 17.2

  • Brendan MacLean Brendan MacLean committed [r11559]

    Skyline: Improve ImportResultsNameDlg to actually show the names that will result from removing prefix and suffix

  • Brendan MacLean Brendan MacLean committed [r11558]

    Skyline: Fix exception in SkylineTester when no log entry is present

  • Brendan MacLean Brendan MacLean committed [r11556]

    Skyline: Clean-up Nick's forms a bit and make them localizable

  • Brendan MacLean Brendan MacLean committed [r11554]

    Skyline: Increase logging verboseness in the hope of learning new information about MethodEditTutorialTest failures

  • Brendan MacLean Brendan MacLean committed [r11553]

    Skyline: A bit of versioning clean-up

  • Brendan MacLean Brendan MacLean committed [r11547]

    Skyline: Add SummaryGraphLinePlotsTest to test new summary line plot support

  • Brendan MacLean Brendan MacLean committed [r11539]

    Skyline: More access to line plots for RT and peak area replicate comparison graphs

  • Brendan MacLean Brendan MacLean committed [r11538]

    Skyline: Add yet more waiting to MethodEditTutorialTest to see if it fixes our most common intermittent failure

  • Brendan MacLean Brendan MacLean committed [r11530]

    Skyline: Make sure all graphs and grids return focus to the Targets view when Escape is pressed

  • Brendan MacLean Brendan MacLean committed [r11529]

    Skyline: Merged revision(s) 11476-11492 from branches/work/20171019_merck_daily:

  • Brendan MacLean Brendan MacLean committed [r11521]

    Skyline: Rename Chinese tutorials to match English versions

  • Brendan MacLean Brendan MacLean committed [r11502]

    Skyline: Merged revision(s) 11496-11497 from branches/skyline_3_7:

  • Brendan MacLean Brendan MacLean committed [r11497]

    Skyline: Turn off TestImportResultsCancel for stress testing because it just produces intermittent failure noise, and gets coverage from TeamCity and commit testing

  • Brendan MacLean Brendan MacLean committed [r11496]

    Skyline (3.7): Add Vagisha's command-line patch for --remove-all in case of another 3.7 patch release.

  • Brendan MacLean Brendan MacLean committed [r11495]

    Skyline: Change order of DocChangeLogger and CheckDocumentState to try to get more information on intermittent nightly test failure

  • Brendan MacLean Brendan MacLean committed [r11492]

    Skyline: Fix to allow run durations less than < 5 minutes (anything greater than zero) for ExportMethodDlg

  • Brendan MacLean Brendan MacLean committed [r11476]

    Skyline: Small molecule fixes from Brian.

  • Brendan MacLean Brendan MacLean committed [r11474]

    Skyline: make branch for Merck course release of Skyline-daily

  • Brendan MacLean Brendan MacLean committed [r11453]

    Skyline: Attempt to fix intermittent failure in TestLibraryExplorer

  • Brendan MacLean Brendan MacLean committed [r11451]

    Skyline: Add "None" element for CE prediction.

  • Brendan MacLean Brendan MacLean committed [r11446]

    Skyline: Merged from 3.7 branch: Connect semi-cleavage checkbox to new Enzyme in OkDialog for Edit Enzyme form

  • Brendan MacLean Brendan MacLean committed [r11445]

    Skyline: Connect semi-cleavage checkbox to new Enzyme in OkDialog for Edit Enzyme form

  • Brendan MacLean Brendan MacLean committed [r11436]

    Skyline: Fix Remove Above Area CV Cutoff to remove peptides above q value cut-off as well

  • Brendan MacLean Brendan MacLean committed [r11435]

    Skyline: Implement retry logic in SkylineNightly when SkylineTester completes in under 60 minutes with no reported tests to improve handling of SVN checkout failures

  • Brendan MacLean Brendan MacLean committed [r11434]

    Skyline: Add Peptide Sequence Length field to reports

  • Brendan MacLean Brendan MacLean committed [r11426]

    Skyline: Fix a few more ReSharper 17.2 warnings

  • Brendan MacLean Brendan MacLean committed [r11425]

    Skyline: Fix some ReSharper 2017.2 warnings

  • Brendan MacLean Brendan MacLean committed [r11423]

    Skyline: Apply changes to drift time predictor tutorial based on Brian's feedback

  • Brendan MacLean Brendan MacLean committed [r11405]

    Skyline: Final tweaks to new draft of drift time tutorial

  • Brendan MacLean Brendan MacLean committed [r11404]

    Skyline: Disallow using dotp scores with less than 3 values in peak picking

  • Brendan MacLean Brendan MacLean committed [r11403]

    Skyline: Drift time predictor training tutorial rewrite

  • Brendan MacLean Brendan MacLean committed [r11362]

    Skyline: Keep original integration peak shading from showing up on peaks that are not user set

  • Brendan MacLean Brendan MacLean committed [r11360]

    Skyline: Force tutorial tests to use full data on pass0 to keep from losing test coverage of the full tutorial scenarios

  • Brendan MacLean Brendan MacLean committed [r11357]

    Skyline: Fix Remove duplicates checkbox in advanced refinement dialog not working

  • Brendan MacLean Brendan MacLean committed [r11356]

    Skyline: Remove PauseTest() left in MultiSelectRetentionTimeTest and speed the test up slightly

  • Brendan MacLean Brendan MacLean committed [r11355]

    Skyline: Fixes to MultiSelectRetentionTimeTest to match with Tobi's fixes

  • Brendan MacLean Brendan MacLean committed [r11351]

    Skyline: Potential fix for MethodEditTutorialTest failures in nightly test runs

  • Brendan MacLean Brendan MacLean committed [r11333]

    Skyline: Fix code inspection errors for unlocalized strings

  • Brendan MacLean Brendan MacLean committed [r11329]

    Skyline: Add common suffix removal to ImportResultsDlg

  • Brendan MacLean Brendan MacLean committed [r11321]

    Skyline: Turn off small molecule tests again for developer commit testing

  • Brendan MacLean Brendan MacLean committed [r11320]

    Skyline: Attempted fix for TestUniquePeptidesDialog failures on BSPRATT-UW1

  • Brendan MacLean Brendan MacLean committed [r11296]

    Skyline: Merge from 3.7 branch

  • Brendan MacLean Brendan MacLean committed [r11294]

    Skyline: Improvements to make TestCEOptimizationTutorialAsSmallMolecules run through the full tutorial

  • Brendan MacLean Brendan MacLean committed [r11292]

    Skyline: Fix ChromUITest to pass offscreen and not use constant GlobalIndex values

  • Brendan MacLean Brendan MacLean committed [r11286]

    Skyline: Fix NullReferenceException in command-line mProphet reintegration and add test for this case to avoid future issues

  • Brendan MacLean Brendan MacLean committed [r11285]

    Skyline (3.7): Fix Japanese translation mistake in

  • Brendan MacLean Brendan MacLean committed [r11270]

    Skyline: Make mProphet model failure on too few targets or decoys less restrictive and improve the error message

  • Brendan MacLean Brendan MacLean committed [r11266]

    Skyline: Fixes related to getting "may not be a valid proteome file" message when background proteome is missing

  • Brendan MacLean Brendan MacLean committed [r11251]

    Skyline: Merged revision(s) 11250 from branches/skyline_3_7:

  • Brendan MacLean Brendan MacLean committed [r11250]

    Skyline (3.7): Revert obviously wrong Japanese string change

  • Brendan MacLean Brendan MacLean committed [r11249]

    Skyline: Fix handling of 3.7 small molecule documents with mass-only precursor definitions

  • Brendan MacLean Brendan MacLean committed [r11245]

    Skyline: Merged revision(s) 11230-11239 from branches/skyline_3_7:

  • Brendan MacLean Brendan MacLean committed [r11244]

    Skyline: Fix neutral loss removal from explicitly modified peptides when changing Instrument m/z range

  • Brendan MacLean Brendan MacLean committed [r11243]

    Skyline: Avoid race condition in document change logging during nightly tests

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