Activity for Birgit Meldal
-
Birgit Meldal posted a comment on ticket #107
My request is definitiely species agnostic (applies at least to human and mouse which...
-
Actually, delete 'optional' as in these specific receptors they are required, and...
-
The variation to the role in the cell cycle adds indeed a further complication. It's...
-
Copied to GH.
-
Or we create the specific complexes in the complex portal as children of the generic...
-
Hi Jane, How does it differ from GO:0022848 acetylcholine-gated cation channel activity?...
-
Annotating protein complexes
-
expand def of GO:0030133 transport vesicle
-
Thanks. Yes, CP = complex portal, was in a rush ;-)
-
add parent for GO:0005658 alpha DNA polymerase:primase complex
-
pyruvate kinase complexes - amendments
-
GO:0030289 protein phosphatase 4 complex - expand def
-
Sorry for throwing a spanner in the works, I just realised that our options are slightly...
-
Sounds like obsoletion of ST-complex is the way to go and creation of new CST complex....
-
Hi Nancy and Tanya, Yes, this needs tidying :) Having skim-read the papers, as far...
-
I just saw that Anna also created GO:1990759 HCN2 channel complex. This should probably...
-
Forgot: narrow synonyms: HCN1 channel complex K/Na hyperpolarization-activated cyclic...
-
PS: you can find existing SMAD complexes in the CP by searching with the GO term...
-
GO:0071141 SMAD protein complex - children or narrow synonyms?
-
Forgot: narrow synonyms: HCN1 channel complex K/Na hyperpolarization-activated cyclic...
-
relax def for GO:1990746 HCN4 channel complex
-
IntAct uses GO BP terms as xrefs on enzymatic reactions but we can't use C16. I think...
-
IntAct uses GO BP terms as xrefs on enzymatic reactions but we can't use C16. I think...
-
I think you are right, Rebecca. Ubiquitin-conjugating enzymes should act prior to...
-
Yes, I totally agree with the merge! Although, GO:0034273 is historically the oldest...
-
Thanks, Paola. I may not get round to it until Tuesday either ;-) Birgit
-
David, something muddled up a few term IDs and names (appear as @@ <numbers> @@),...
-
See and noted! I might not get to this until next week as I have a training course,...
-
new qualifier=part_of
-
Thanks. Everything done now :)
-
Would it make sense to have a parent "hormone complex" akin to "GO:0005179 hormone...
-
Sounds reasonable. Please go ahead with the edits. Birgit
-
The whole complex facilitates the internalization and degradation of organophosphonates....
-
Sorry, David, the complex should also have relationships: capable_of_part_of GO:0015716...
-
Thanks, David. We should probably also have a complex for GO:0016772 transferase...
-
Thanks, David. Do you want to create the complex term as well once you have created...
-
NTR alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase
-
Yes, that's right. If there is a PRO ID for a complex we add it as a xref but as...
-
Only just seen this: Val writes: ".....Of course the problem would also go away if...
-
[Term] id: GO:1904176 name: carbon phosphorus lyase complex namespace: cellular_component...
-
Hi Tanya, I'm sorry, but could you take the 2 synonyms out again, please? I just...
-
Thanks, Tanya. I created 'GO:1904176 carbon phosphorus lyase complex' in TG as discussed...
-
Hi Tanya, This looks more difficult than I thought! The dimer exists (crystal in...
-
Thanks Paola. Did you take the has_part relationships out of the ancestor chart recently?...
-
Thanks Paola. Damn autocorrect ;-) Birgit
-
Hi Paola, Add 1) If I was to find situations where they weren't anti-apoptotic I...
-
Hi Paola, This one BCL-2 homodimer Accession number: EBI-706546 is also anti-apoptotic...
-
anti-apoptotic protein complexes - parent structure?
-
relationships of nucleic acid binding terms and transcription factor activity terms (and BP terms?)
-
All terms have been committed. Ticket can be closed :) (unless David OS wants to...
-
All terms have been committed. Ticket can be closed :) (unless David OS wants to...
-
Yes, unless Val objects... Sorry about the mess, but we've learnt something :) B...
-
I didn't realise until today that you where in CB! I was in one of the ontology seminars...
-
PS: I'm having other MAD1 and MAD2 complexes on my annotation list :)
-
Yes, Val. According to the review paper (22898774, Fig 1) MAD1-MAD2 (C-MAD2 version)...
-
We found another paper: PMID:18022367 (MAD2 dimer crystal structure) From the introduction:...
-
Val, we (in the Intact team) are currently mulling over the MAD1 homodimer and its...
-
New def: A heteromeric transcription factor complex that binds to the CCAAT-box upstream...
-
addition for def and synonym for GO:0016602 CCAAT-binding factor complex
-
No worries, Val! This complex was curated by a short-term project student so I'm...
-
adustment to GO:0033597 mitotic checkpoint complex plus new subcomplex GO:1990706 MAD1 complex
-
Last set of terms from this ticket added via TG FF: 1.2: GO:1990701 integral component...
-
Thanks, David OS! Yes, I did think a template would be rather helpful but couldn't...
-
Next round of terms added via TG FF. 2.1 GO:1990693 intrinsic component of Golgi...
-
Next round of terms added in TG FF: 1.1 GO:1990687 endoplasmic reticulum-derived...
-
Yes, we are adding a lot of complexes :) We try to xref PRO in the complex portal...
-
As far as I can see, they all phosphorylate the PIs at various positions and the...
-
Thanks :)
-
Yes, I think it should be extrinsic component of membrane. Could we add something...
-
PMIDs: 10625637 and 14617358
-
parent of GO:0005942 phosphatidylinositol 3-kinase complex
-
In that case, GO:0098722 asymmetric stem cell division needs a new is_a parent of...
-
Hi David, I have started with the first round of new 'parent terms' in TG FF: 1.1...
-
Hi David, I have started with the first round of new 'parent terms' in TG FF: 1....
-
And please change the PMID on all three TG entries to 15642721 (I copied from the...
-
add AEs to NEW term GO:1990662 S100A9 complex
-
add parents to NEW term GO:1990657 iNOS-S100A8/A9 complex
-
Please close this ticket, it has been super-seeded, see above.
-
Thanks Tanya, Looks good to me :) Birgit
-
Thanks, Midori! Yes, I think my original def was a bit clumsy :( What about: "Any...
-
Hi David, I'm ready to get to work on these and the related tickets. Birgit
-
Hi David, I'm ready to get to work on these and the related tickets. Birgit
-
Hi David, I'm ready to get to work on these and the related tickets. Birgit
-
Hi Tanya, Val and Midori (and others), I agree with: - part_of lagging strand elongation...
-
Hi Tanya, I think I created the term for the E.coli primosomal complexes. If you...
-
bacterial degradosome: should have restriction :) Birgit
-
If there is clear evidence that this complex exists in vivo even if its function...
-
Ok, will check again next week. Although 'slow' is an understatement as you made...
-
GO:0005667 transcription factor doesn't show up yet as a parent in QuickGo.
-
Please re-assign or action :)
-
Please amend the mistaken name :)
-
The new terms discussed above have not been created after all and the complex term...
-
needs re-assigning
-
Yes, dimer has serine/threonine protein kinase activity: From EBI-8872439: Properties:...
-
Please scrap this, terms have been changed, see #11426
-
Thanks :)
-
I thought I'd check but that was what I thought the nucleocytoplasmic shuttling terms...
-
are SMAD complexes nucleocytoplasmic shuttling complexes?
-
Yes, you are right, the capable_of_part_of bit was rubbish :( - in fact, I will have...
-
Definitely copy/paste error :( Should be: GO:1990589 ATF4-CREB1 transcription factor...
1 >
