Activity for Alexander Platzer
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Alexander Platzer modified ticket #5
blastp issue
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source code for ConsPred2 binary
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integrate the use of fragmental sources
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no further request;
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Merge branch 'master' of ssh://git.code.sf.net/p/conspred2/code
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version++
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contentual typo in the configs
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added and used more parameters:
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blastGenes declared different
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issue with new labels at one converter
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intermediate change of the config
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last element/empty set issue and resolved accid...
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resolved label but and generic interpro
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bugfix for the absence of the taxonomy filter
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version change (new version)
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made one point in the docu/comments more clear
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changed config
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version change added
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cosmetic: version and usage
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removed range filter when there is no genome
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removed range-filtering for coordinates
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integrate the use of fragmental sources
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tidied up +1
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Merge branch 'master' of ssh://git.code.sf.net/...
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++docu for the core module
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++docu
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docu formatting
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docu++
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docu - removed offline points
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initial version
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Initial commit
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one path/call for interpro was still wrong (fixed)
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exchange of the core modules and slurm update
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default config changes for the new local cluste...
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config for less sources
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Merge branch 'master' of ssh://git.code.sf.net/...
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docu++ (in conspredProperties.txt)
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changed config file for cube-use and added seco...
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docu++
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fixed taxonomy as text; especially when contain...
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stepwise merge...
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++docu
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set README to remote;
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more memory for critica
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fix for version 1.21
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docu++
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check invalid characters in handle in the begin...
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docu++
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updateDatabases++; a config variable changed fo...
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updated environmentPreparation by ThomasR
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updated environmentPreparation by Thomas Rattei;
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readme++
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java source update; changed MergeGff and relate...
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when more output from mergegff, the calling bas...
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fixed some bugs in MergeGff.jar;
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removed the progress indicator and added anothe...
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docu++
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removed confusion between 'less than' and '-le'
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Merge branch 'master' of ssh://git.code.sf.net/...
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version..
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version string and Prodigal default to old version
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docu++
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config docu++
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docu++
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Merge branch 'master' of ssh://git.code.sf.net/...
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changed the way of replacement, which removes e...
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new path for critica scripts in config
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++checks for missing executables
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second part for the progress indicator;
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++depedency checks (intermediate)
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added a progress indicator;
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docu++
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readme++
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added some more docu
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better variable replacements for SGE
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recovered the overview in step 99.
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fix for the cleaning for critica
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seqstat executable is now an variable (differen...
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not sure why there should be an empty line in t...
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logging was unset in combinedSteps03 -> set
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changes for the new version of prodigal because...
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1x undefine
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added permission
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removed doubled CPU variables;
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second try for this typo
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comment for fix: remember, if you just add a ne...
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a single space more for logging (changed the lo...
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moved also job files to specificSteps;
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added a crude way to wait for all jobs of a com...
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the scripts for each steps, the combined ones a...
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Merge branch 'master' of ssh://git.code.sf.net/...
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test
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resolved the issue with the tmp-folders when it...
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merge after more changes at once
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CORESatONCExxx are now variables (these are use...
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now all job scripts are split in header and bod...
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'old/' sounded a little bit odd for the actual ...
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after an update of BioPerl, one module of it is...
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