Invalid SAMFLAG for paired alignment
I know this is a long time coming, but we finally looked into this and we think the...
Bowtie2 segfault
That error is often because memory is exhausted. Can you tell us more about how big...
This is because the pseudo-random number generator is initialized fresh for each...
Results on reverse complement reads
Hi Francesca, Bowtie 2 is not guaranteed to find all valid alignments. It uses heuristics...
Thanks for these helpful reports! Val and I just fixed this in the bugs/313 branch,...