Sergey Kolchenko

Hi! How can I extract positions of filled regions relative to corrected assembly? What I mean is that suppose I have a gap in my initial assembly, e.g from 1282 to 3157 and I want to know coordinates of sequence, inserted in my corrected assembly in stead of this gap. This sequences can be bigger or smaller than predicted gap size + corrdinates will be shifted because of other filled gaps. For example, In my case it can be sequence of length 200 and its new coordinates can be 1800-2000 How can I...