Activity for Adam Auton
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Adam Auton committed [r1001]
More cleaning of --LROH function.
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Minor change to use (slightly) less memory when...
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Minor change to use (slightly) less memory when...
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Added --mendel option for finding mendel errors...
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Removal of old experimental branches.
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*Actually* allow haploid individuals when using...
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--max-missing yields wrong proportion
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Minor documentation change.
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Added 'any' options for filtering by allele cou...
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Change to experimental --hapcount function.
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Bug fix. Exclude half-genotype calls in Fst cal...
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Added experimental --hapcount function.
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Tajima's D should be NaN in the absence of data.
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Make --hap-r2-positions and --geno-r2-positions...
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Minor tidy up of tempfile code in LDhat output ...
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Use C++ ofstream for temp files instead of C FI...
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Minor changes to LD functions and documentation.
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Correction to documentation regarding LD statis...
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Changes to allow --diff options to output to st...
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Removed inline from pswap function, which break...
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Added --indv-burden option.
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Allow different handling of hom-alt variants in...
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Stop segfault for --indv-freq-burden when encou...
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Use scientific notation for --hardy p-values.
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Added tests for too many / too few heterozygote...
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Don't count SVs when making indel length histog...
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Be a bit more strict when filtering indels (i.e...
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Fix to --indv-freq-burden.
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Added --indv-freq-burden as an experimental fun...
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Removed unused DEFINEs. Increase RMAX to 250.
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Non-existant exclude file does not cause program to terminate with non-zero status
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status: open --> closed
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Filtering a VCF with a BED file
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status: open --> closed
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