Andrew

This should be fixed now in master.

Unfortunately defuse does not currently take advantage of the additional information...

What i mean is, when you run create_reference_dataset.pl, what is stderr and stdout?...

What is the output of create_reference_dataset.pl? On Wednesday, October 22, 2014,...

Thanks! There is a fix in master. Its untested, currently testing it now.

I no longer have this issue. What type of gtf feature is it crashing with?

Please check that line 249 of create_reference_dataset.pl is: my %accepted_feature_types;...

The format of the Emsembl GTF has changed. I have committed a fix for this, please...