ambika Pokhrel

Hello everyone, I am following one paper https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-2486-8 in order to distinguish the core and accessory chromosomes of several genomes that I am working with. For this I did PROmer alignment, and generated the output files (delta and coords files). From the paper they say that the scaffolds with >=30% of their length covered by unique promer matches to core chromosomes of reference genome were considered core chromosomes and the rest as accessory...