Activity for Alberto Magi
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Alberto Magi posted a comment on ticket #1
can you share the new vcf file?
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in the header there are no ## and # in all lines. Can you make a snapshot of 'head ctg92.vcf'.
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can you show me the header?
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The VCF files are not properly formatted. They do not have mandatory header lines. alberto@neo:~/HaplotypeAssembly/DataKlopp> head ctg4.vcf ctg4 31 . T C 1011.1 . AB=0.483871;ABP=3.22044;AC=1;AF=0.5;AN=2;AO=45;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=3.05855;EPPR=3.73412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=232.814;PAIRED=0.733333;PAIREDR=0.770833;PAO=0;PQA=0;PQR=0;PRO=0;QA=1619;QR=1677;RO=48;RPL=1;RPP=92.2337;RPPR=75.3927;RPR=44;RUN=1;SAF=23;SAP=3.05855;SAR=22;SRF=28;SRP=5.9056;SRR=20;TYPE=snp...
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Ok. Thank You. It could be a problem of convergence. Could You kindly provide me the .frg and .vcf files?
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ok....frg files look correct....You stopped the process after 48 hours....network files were generated?
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may I see the header of the .frg file? How did you obtain the .frg file? Did you use the extractHAIRS from HAPCUT2 tool?
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Hi, this error comes when there's inconsistency with the target you have used. It's...
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Dear Zhili Chang, Are you using WES data? Did you check chromosome encoding in bed...
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EXCAVATOR: detecting copy number variants from whole- exome sequencing data
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EXCAVATOR: detecting copy number variants from whole- exome sequencing data
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