Activity for Alan W. Irwin
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Alan W. Irwin committed [1d7162] on Code
Documentation: remove instructions for hand-crafted installs from document_FreeEOS/release_figures/README.install_FreeEOS_versions
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Scripts: Add installation of all old (Make-based and autotools-based) release versions to scripts/install_FreeEOS_versions.sh
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Scripts: replace "yes" and "no" user responses with "y" and "n"
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Update scripts/install_FreeEOS_versions.sh to define and use additional functions and install extra free_eos library versions
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Build system: Disentangle BUILD_TEST, BUILD_papers, and BUILD_release_figures logic
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Fix bug introduced in last commit and also fix trailing whitespace issues
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Simplify 2.2.0 commentary
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Document timing results that were calculated with a cleaner timing environment
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Scripts: Implement new script to help evaluate timing results
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Reduce build-tree footprint of free_eos_grid results
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Implement detailed timing of the logp_${version} targets
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Build system: Update and test the staged website
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Build system and scripts: Change three CMake project names so they self-document those projects a lot better
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Build system: significantly update the CMake options and their associated logic
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Update scripts/test_FreeEOS.sh by adding the -Orecurse option for all make commands
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Substantial update of scripts/test_FreeEOS.sh
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Rename scripts/install_FreeEOS.sh to scripts/install_FreeEOS_versions.sh
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Update scripts/install_FreeEOS.sh and scripts/newenv.source_script
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Implement bash script to install various versions of FreeEOS
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Build system: Remove unneeded FreeEOS library install directory component from the runpath of the free_eos library
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Fix both interactive and noninteractive error handling capability for the bash source script, scripts/newenv.source_script
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Pre-release update of version numbers for the FreeEOS package and libraries
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Make complete testing of FreeEOS much more convenient
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Address CMake 3.31.5 warnings concerning the now-deprecated method used to find and use the Python3 interpreter
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Update instructions for testing FreeEOS
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Complete the current topic branch to replace ancient static release figures with generated release figures in the website
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For static html website files use new naming convention when referring to generated release figures
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Remove ancient static release figures
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Remove symlinks (all currently broken) and historical speculation concerning those from the www subdirectory
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Improve how doxygen-generated files are treated
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Replace the traditional Fortran 77 code in the BFGS implementation for the free_eos library with modern Fortran best practice
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Use fixed scaling for the chirho figures associated with the convergence paper
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Implement the check_computational_boundary_test target
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Update free_eos_test to make better use of the returned info argument
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Change partial_aux size from naux to n_partial_aux in all routines other than free_eos_detailed
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Use Fortran preprocessor directives to implement fermi_dirac_integrator and fermi_dirac_integrator_1 from the same source code
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Extend release figures project to all release figures that can be straightforwardly generated with modern methods
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No longer exclude files in the release_figures subdirectory from the search and removal of trailing whitespace
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For increased flexibility make zplot allocatable in free_eos_grid_main.f90
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Implement the first stage of the automated release figures development
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Build system: support versioning of installed free_eos package
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Tweak README.Release_Manager_Cookbook
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Prepare for the next (likely 3.1.0) release cycle by reducing README.release to a template
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Write announcement (in SF-compatible markdown format) for 3.0.0
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Remove trailing whitespace introduced by accident by recent commits
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Add recent commits to ChangeLog.release for the forthcoming 3.0.0 release
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scripts/remove_trailing_whitespace.sh: additionally exclude doxygen-generated files in the source tree
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Build system: fix recently introduced install target bug
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Update ChangeLog.release from 2.2.1 version to the 3.0.0 version
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Renamed ChangeLog to ChangeLog.release
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Tweak README.Release_Manager_Cookbook
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Prepare top-level INSTALL and README.* files for the forthcoming 3.0.0 release
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Build system: Implement the PREBUILD_DIST option
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Build system: almost complete revision of CPACK_SOURCE_IGNORE_FILES
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Extra notes for commit 34535f0:
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Extra notes for commit 7bff2e0:
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Extra notes for commit a9c2b6a:
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Extra notes for commit 8b559b83c:
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Fix the final uninitialized issue discovered with nagfor -C=undefined
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Fix one of the remaining two uninitialized issues discovered with nagfor -C=undefined
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Solve *_dv array initialization issues that have been discovered with nagfor -C=undefined
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Solve all eos_calc initialization issues that have been discovered with nagfor -C=undefined
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Update Copyright information to 2022 for all files whose previous Copyright was 2020 or 2021
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Implement the easiest fixes for uninitialized issues found by the nagfor -C=undefined option
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Fix most nagfor 7.1 compiler warnings
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Improve/rationalize formatting of stdout messages from all "simple_test" target utilities
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Doxygen documentation: Finish summary documentation for module procedures
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Doxygen documentation: expand use of \param[DIR] construct (where DIR is one of in, out, or in,out) to all procedures that currently have their arguments documented with doxygen
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Doxygen documentation: Implement that documentation for eos_jacobian and update that implementation for eos_warm_step
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Correct intent of pr variable in subroutines.
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Remove workaround for ifort spread function bug
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Best practices: replace intent(inout) allow_log and allow_log_neg by intent(in) and intent(out) variables
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Doxygen documentation: Implement that documentation for eos_warm_step
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doxygen documentation: replace "@param" with "\param" for consistent style in doxygen comments
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Doxygen documentation: fix build-system dependency bug
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Doxygen documentation: Implement that documentation for eos_cold_start, finish that implementation for eos_warm_step, and make the variable naming scheme for derivatives more consistent
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Implement verbosity control
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Implement documentation of the legacy and modern API's for free_eos in the README file
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Replace "read(*", "write(*...", "write(0...", and flush(0..." with "read(stdin...", write(stdout...", "write(stderr...", and flush(stderr..."
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Doxygen documentation: complete the mod_eos_calc documentation
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doxygen documentation: mv doc to document_FreeEOS/doxygen and implement PDF form of doxygen documentation
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doxygen documentation: work around two doxygen issues for modern Fortran
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Change from Fortran "include" to preprocessor "#include"
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Use conditional compilation to make code compatible with both ifort and gfortran
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Bump CMake minimum version from 3.13.4 to 3.18.4
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Generalize the free_eos_grid utility
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Replace every x**(a+1/2) where a is an integer >=1 by x**a*sqrt(x) for faster computation
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Replace in-line log(10._fp_kind) calculations with the ln10 = log(10._fp_kind) parameter
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Use common configurable LaTeX preamble for each of the documentation papers
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Revert text content of all automatically generated papers to that used for the current SF documentation papers
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eff_fit documentation paper: Finalize modern figures
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Bump SOVERSION for all libraries from 0 to 1
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I have adopted 3.0.0 as the forthcoming release version
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Update free_eos_test.stdout_standard to be consistent with the eos_calc rewrite of the previous commit
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Fix size of explicit-shape dimension in mod_bfgs.f90
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Build system: generate a FATAL_ERROR if supported_fp_precision LESS 15 or supported_fp_exponent LESS 300
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Perform substantial rewrite of eos_calc
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Implement configurable version of programmed tainting of arrays
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Add another error return to free_eos_detailed for the case where a NaN value of fl is detected during the cold start iteration
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