adedayo Adeyanju

The error was created from the output of the (Create a synchronized file) java -jar /group/bioinfo/apps/apps/popoolation2_1201/mpileup2sync.jar --input p1_p2.mpileup --output p1_p2_java.sync --fastq-type sanger --min-qual 20 --threads 20 initially, I was using Illumina as my fastq type which is correct but it seems the software did not recognize this I used sanger as my --fastq-type instead of Illumina and that seemed to solve the problem. On Thu, Jul 6, 2017 at 7:25 AM, Chris Allan cjaln200@users.sf.net...

SNP-frequency-diff.pl output error