Activity for Adam Gardner
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Adam Gardner posted a comment on ticket #16
Hi Lydia, The membrane has two orientations. If you draw it counter clockwise and close it the inside of the membrane faces out. Try drawing the membrane in a clockwise orientation. Then the membrane bound proteins should face out :). Let us know if you have any other problems! Good luck with your assignment! Best, Adam.
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Hi Mathilde, Thank you for the kind words! It's possible the server is down or or misconfigured. And yes it is possible to load an image to circumvent that system or even just make something fun and unique. We tried to make cellPAINT work on most hardware, the only requirement for ingredient creation is an internet connection. I will send a tutorial later tonight. Cheers, Adam.
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Oh wow, I will look into that. Your complex must just be bigger than the texture we use. I will do a fix and update.
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Hi Arie, Sorry for the long delay. It took me a forever to figure out some of the codesigning problems and entitlements on MacOS. I think I solved it, there are some other issues namely highlight not working and it hasn't been fully tested, but if you download the latest mac version it should work. fingers crossed! Best, Adam.
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If you change the background to white can you see the black proteins that were painted? I'm trying to recreate this error. But I haven't been able to. Best, Adam.
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Alternativly the web app is fully functional and doesn't require permissions to run. It just requires a browser like google chrome. https://ccsb.scripps.edu/cellpaint/
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Hi Arie, I think we have it on our Scripps page, but it's not on the sourceforge. I will add it. Ideally I would sign the app with the Apple Gatekeeper and avoid the problem alltogether. I think that last step may be unecessary. I tried on my laptop and when I ctrl + opended after the chmod step I got a message that prompted me to move the app to the trash. I hit cancel and then ctrl + opened again and got the same message but that time there was another button that allowed me to open the app. Does...
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Hi Arie, Sorry for the inconvenience. It is due to the gate keeper on new macs, here is the solution: Open Terminal or iTerm and type "chmod -R 755 " and drag the .app into the window, which will bring the full path into Terminal or iTerm. It will look like this: chmod -R 755 Path\ to\ app\ file.app Press return Then, you can open the app file normally, but it will fail because gatekeeper won't be able to verify the file. From there, go into your "Security and Privacy" in "System Preferences" and...
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I will take a look at that. Would you be able to send me the save file? agardner@scripps.edu
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Hi Sarah, Its actually a very subtle effect. You will notice some of the chains are slightly darker grey. That way when you color the molecule its the same color but the alternate chains are slightly darker. We could do a feature request to make the chains colors more distinct or let you color them independently. Cheers, Adam.
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Hmmm... Sorry for the difficulty! have you tried any solutions in this thread: https://developer.apple.com/forums/thread/666611 I will install Big Sur on our mac computer and see if I can recreate the issue.
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I think you probably did the chmod correctly. However, I think the problem is your administrator privileges. Are you an administrator on the computer?
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It's not the easiest fix sorry, but the good news is that there is one. You need to go into the terminal and "chmod +x" the application. You can drag the executable into the terminal to get an exact path. Here is a more detailed explanation: https://superuser.com/questions/898124/the-application-someapp-app-can-t-be-opened If you still have a problem let me know :)
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Hi Mattia, That might have to be solved with an update. It's actually the second time I've seen that bug, but I haven't been able to reproduce it on my end. Would you be able to send me an email to agardner@scripps.edu? I will send you a special build that saves a log file so we can get to the root of the error. Cheers, Adam.
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Hi Connor, If you control click and select open from the dropdown it should add an exception for the app. There is an "untrusted developer" exception that we haven't been able to get around yet. However we don't add anything sketchy (besides the protein sketching part (^-^)) to our software so there is nothing to worry about anyway. Cheers, Adam.
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Hi Kane, Sorry about the bug and confusing release names, the software is still in development. It should work standalone "cellPAINT" application from the folder without needing any files. What platform are you using? There are three 2D builds (Which I recomend using at this point, they are the most complete); Windows, Mac, and Linux. As well as a version that we are currently very activly working for virtual reality headsets. Which if you downloaded and don't have a headset would explain the blank...
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