Activity for Alice Cheng
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Alice Cheng committed [r17181]
Added cucumber tests for cascade search
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Cascade search file column bug
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Added missing good results file for isotope error
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Added Isotope Error
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Just fixed and put into the trunk all the lint errors except 1: ../../src/io/SQTWriter.cpp:61:...
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Updated io files to adhere to lint tests. Code ...
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Threading bug in cascade-search?
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Fixed cascade-search lock bug. See issue #427.
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Just figured out what was going on. It was a lock problem. There's a if () { continue;...
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One of the cmd options you specified is --num-threads 1, so there shouldn't be any...
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Just ran performance tests on my mac and linux. Logs are attached below. Linux does...
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Fixed psm-convert documentation for supported i...
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Updated tide-search to use psmconvert. Fixed bu...
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Progress message from tide-search inaccurate with threading
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Fixed percent progress message bug for skipped ...
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Would the patch attached work? Instead of introducing a separate variable, we could...
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additional details: occuring in PeptideSrc.cpp line 354 when trying to convert "162)"...
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PSMConvert fatal exception on mac os x
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Updated release notes to mention threading
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I took a brief look at the output files and did a manual diff. It looks like what...
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Updated parameters for num-threads. Code review...
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Add threading with boost to tide-search. Code r...
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Undo failing revision #16928
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Added threading to TideSearchApplication.cpp. C...
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Updated PSM Convert working for peptides with n...
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It works now, thanks!
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FATAL error when running tide search with pepxml output
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FATAL error when running tide search with pepxml output
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I tried a deep clean, cmake, and make with gcc 4.9.1 after loading it from module,...
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FATAL error when performing tide-search with trunk
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Fix bug with MzIdentMLWriter CalulcatedMassToCh...
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MzIdentMLWriter and Reader Calculated Mass To Charge Value Incorrect
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cleaned up code in PSMConvert
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Concat Bug/Distinct Matches Fix Code reviewed b...
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Current PSMConvert with new files
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Current PSM Convert
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Reference: We have 2 types of output methods. 1. Direct output (writing only tab-delimited...
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Fix features in concatenated search
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MatchCollectionParser creating Proteins for Targets instead of PostProcess Proteins
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Using grep with 'getDeltaCn' and 'setDeltaCn', it stated that MatchCollection, Match,...
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I thought the input delta_cn was correct? Though I am not too sure what the correct...
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MatchCollection method extendTabDelimited corrupts delta_cn value
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Yes, it fixed the seg fault.
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SQTReader Constructor Bug
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SQTReader Constructor Bug
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Testing svn commit, multi-threading with varyin...
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Alice's First Checkout
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Alice's First Checkout
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