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#48 Root terms: 5 new and 14 modified terms

plant anatomy
closed
1
2014-05-28
2009-11-18
No

The ISRR (International Society for Root Research has established a root nomenclature framework.
I have developed a set of terms, that are new to the po_anatomy.obo, which come from that Framework. These are ID:0000000 and ID:0000001 in the attached mini ontology. I have devised three more new terms to fill out the root nomenclature in the ontology (IDs 0000005; 0000006; 0000007).
I have modified14 terms to bring them i line with the ISRR nomenclature: PO:0000042; PO:0000043; PO:0000044; PO:0000045; PO:0000046; PO:0003005; PO:0004708; PO:0004724; PO:0009005; PO:0020031; PO:0020037; PO:0020100; PO:0020121; & PO:0020127.

Related

Plant Ontology (PO) TERM requests: #163
Plant Ontology (PO) TERM requests: #170
Plant Ontology (PO) TERM requests: #578
Plant Ontology (PO) TERM requests: #594

Discussion

  • Richard Zobel

    Richard Zobel - 2009-11-18

    flat file in OBO v1.2 format

     
  • Laurel Cooper

    Laurel Cooper - 2010-09-14

    I am opening new trackers for the upper level root terms that are mentioned above: basal root, primary root (taproot), shoot-born root

     
  • Laurel Cooper

    Laurel Cooper - 2010-10-01

    See basal root (PO:0025002)
    (https://sourceforge.net/tracker/?func=detail&aid=3066301&group_id=76834&atid=835555)

    primary (taproot) (PO:0020127)
    (https://sourceforge.net/tracker/?func=detail&aid=3066295&group_id=76834&atid=835555)

    shoot-borne root (PO:0000042)
    https://sourceforge.net/tracker/?func=detail&aid=3066305&group_id=76834&atid=835555

     
  • Laurel Cooper

    Laurel Cooper - 2010-10-02

    This is the list of 14 root terms that RZ proposed modified definitions for. Do we need an individual SF tracker for each one?
    See minutes for POC Conf call 10-6-10 (http://wiki.plantontology.org:8080/index.php/POC_Conf._Call_10-6-10)

    -shoot-borne root (PO:0000042)
    -crown root (PO:0000043)
    -prop root (PO:0000044)
    -embryonic root (PO:0000045)
    -seminal root (PO:0000046)
    -nodal root (PO:0003005)
    -scutellar node (PO:0004708)
    -hypocotyl-root junction (PO:0004724)
    -root (PO:0009005)
    -radicle (PO:0020031)
    -mesocotyl (PO:0020037)
    -hypocotyl (PO:0020100)
    -lateral root (PO:0020121)
    -primary root (PO:0020127)

     
  • Laurel Cooper

    Laurel Cooper - 2014-05-28
    • status: open --> closed
    • assigned_to: Laurel Cooper
    • Priority: 5 --> 1
     

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