The ISRR (International Society for Root Research has established a root nomenclature framework.
I have developed a set of terms, that are new to the po_anatomy.obo, which come from that Framework. These are ID:0000000 and ID:0000001 in the attached mini ontology. I have devised three more new terms to fill out the root nomenclature in the ontology (IDs 0000005; 0000006; 0000007).
I have modified14 terms to bring them i line with the ISRR nomenclature: PO:0000042; PO:0000043; PO:0000044; PO:0000045; PO:0000046; PO:0003005; PO:0004708; PO:0004724; PO:0009005; PO:0020031; PO:0020037; PO:0020100; PO:0020121; & PO:0020127.
Plant Ontology (PO) TERM requests: #163
Plant Ontology (PO) TERM requests: #170
Plant Ontology (PO) TERM requests: #578
Plant Ontology (PO) TERM requests: #594
flat file in OBO v1.2 format
I am opening new trackers for the upper level root terms that are mentioned above: basal root, primary root (taproot), shoot-born root
See basal root (PO:0025002)
(https://sourceforge.net/tracker/?func=detail&aid=3066301&group_id=76834&atid=835555)
primary (taproot) (PO:0020127)
(https://sourceforge.net/tracker/?func=detail&aid=3066295&group_id=76834&atid=835555)
shoot-borne root (PO:0000042)
https://sourceforge.net/tracker/?func=detail&aid=3066305&group_id=76834&atid=835555
I am opening new trackers for the proposed new root terms that are mentioned above, with reference to the IDs in Rich's mini ontology:
- internode root (ID:0000005)
(see: https://sourceforge.net/tracker/?group_id=76834&atid=835555\)
- non-pericyclic lateral root (ID:0000006)
(see: https://sourceforge.net/tracker/index.php?func=detail&aid=3079725&group_id=76834&atid=835555\)
-non-pericyclic basal root (ID:0000007)
(see: https://sourceforge.net/tracker/?func=detail&aid=3079725&group_id=76834&atid=835555\)
This is the list of 14 root terms that RZ proposed modified definitions for. Do we need an individual SF tracker for each one?
See minutes for POC Conf call 10-6-10 (http://wiki.plantontology.org:8080/index.php/POC_Conf._Call_10-6-10)
-shoot-borne root (PO:0000042)
-crown root (PO:0000043)
-prop root (PO:0000044)
-embryonic root (PO:0000045)
-seminal root (PO:0000046)
-nodal root (PO:0003005)
-scutellar node (PO:0004708)
-hypocotyl-root junction (PO:0004724)
-root (PO:0009005)
-radicle (PO:0020031)
-mesocotyl (PO:0020037)
-hypocotyl (PO:0020100)
-lateral root (PO:0020121)
-primary root (PO:0020127)
For root (PO:0009005): [plant-ontology-po-term-requests:#578]
For shoot-borne root (PO:0000042) and shoot-borne nodal root (PO:0003005): [plant-ontology-po-term-requests:#163]
For lateral root (PO:0020121): [plant-ontology-po-term-requests:#473]
For primary root (PO:0020127): [plant-ontology-po-term-requests:#161]
Related
Plant Ontology (PO) TERM requests:
#161Plant Ontology (PO) TERM requests:
#163Plant Ontology (PO) TERM requests:
#473Plant Ontology (PO) TERM requests:
#578Last edit: Laurel Cooper 2013-11-05
Please refer to the associated trackers:
For embryo root (PO:0000045) and child term seminal root (PO:0000046): [plant-ontology-po-term-requests:#594]
For hypocotyl-root junction (PO:0004724) and child terms: embryo hypocotyl-root junction (PO:0025300) and seedling hypocotyl-root junction (PO:0025301):
[plant-ontology-po-term-requests:#250]
Related
Plant Ontology (PO) TERM requests:
#250Plant Ontology (PO) TERM requests: #594
Please refer to the associated trackers:
- crown root (PO:0000043) and prop root (PO:0000044) are both shoot-borne nodal root (PO:0003005): [plant-ontology-po-term-requests:#163]
radicle (PO:0020031)- [plant-ontology-po-term-requests:#344]
mesocotyl (PO:0020037)- [plant-ontology-po-term-requests:#343]
hypocotyl (PO:0020100)- [plant-ontology-po-term-requests:#341]
scutellar node (PO:0004708)- [plant-ontology-po-term-requests:#339]
I am closing this tracker, as further comments should be put on the specific trackers.
Related
Plant Ontology (PO) TERM requests:
#163Plant Ontology (PO) TERM requests:
#339Plant Ontology (PO) TERM requests:
#341Plant Ontology (PO) TERM requests:
#343Plant Ontology (PO) TERM requests:
#344