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#7 test pickle PDBModels.list corrupted

closed-fixed
Biskit.Mod (17)
5
2006-12-29
2006-12-28
No

The Mod/Analyse.py test case fails with:

Traceback (most recent call last):
File "/home/raik/data/py/Biskit/Test.py", line 1220, in test_Analyse
self.assertEquals( t.run(), t.expected_result() )
File "/home/raik/data/py/Biskit/Mod/Analyse.py", line 663, in run
self.a.go()
File "/home/raik/data/py/Biskit/Mod/Analyse.py", line 559, in go
pdb_list = T.Load(self.outFolder + self.F_MODELS)
File "/home/raik/data/py/Biskit/tools.py", line 506, in Load
raise PickleError, 'Python pickle %s is corrupted.' % filename
PickleError: Python pickle /tmp/tmpjsKe3o_test_Analyse/modeller/PDBModels.list is corrupted.

The Mod/Benchmark.py test case fails with a similar error.

This looks like the famous 64 / 32 bit problem (works on 32bit platforms).

Discussion

  • Raik Gruenberg

    Raik Gruenberg - 2006-12-29
    • status: open --> closed-fixed
     
  • Raik Gruenberg

    Raik Gruenberg - 2006-12-29

    Logged In: YES
    user_id=589508
    Originator: YES

    fixed:
    ------
    Pickle re-created after fixing Biskit/Mod/Modeller.py (disconnect models in PDBModels.list from their source pdb).

     

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