Best Merchant Management Software for Shopify

This a list of Merchant Management software that integrates with Shopify. Use the filters on the left to add additional filters for products that have integrations with Shopify. View the products that work with Shopify in the table below.

What is Merchant Management Software for Shopify?

Merchant management software, also known as merchant relationship management software, helps businesses, payment processors, and marketplaces oversee and strengthen their entire merchant ecosystem, from onboarding and compliance to ongoing support and engagement. It centralizes merchant profiles, transaction history, chargebacks, settlement data, and communication records within an integrated CRM-style system to streamline operations and improve relationship visibility. Many platforms include automated underwriting, risk scoring, and KYC/AML checks to ensure compliance, reduce fraud, and accelerate merchant approvals. The software also supports contract management, reporting, payout automation, and targeted outreach tools to enhance merchant satisfaction and retention. Overall, merchant management software increases efficiency, transparency, and control while helping organizations build stronger, long-term merchant partnerships. Compare and read user reviews of the best Merchant Management software for Shopify currently available using the table below. This list is updated regularly.