AlphaGenome

AlphaGenome

Google DeepMind
AlphaGenome Genome Analysis Toolkit (GATK)

Related Products

  • Google Cloud Speech-to-Text
    4.5 out of 5 stars 446 Ratings
    Visit Website for Google Cloud Speech-to-Text
  • D&B Finance Analytics
    4.2 out of 5 stars 802 Ratings
    Visit Website for D&B Finance Analytics
  • ChatD&B
    Visit Website for ChatD&B
  • Feroot
    4.9 out of 5 stars 33 Ratings
    Visit Website for Feroot
  • Anaconda
    4.4 out of 5 stars 626 Ratings
    Visit Website for Anaconda
  • Jscrambler
    4.4 out of 5 stars 41 Ratings
    Visit Website for Jscrambler
  • Vibe Retail
    4.9 out of 5 stars 91 Ratings
    Visit Website for Vibe Retail
  • Source Defense
    5.0 out of 5 stars 7 Ratings
    Visit Website for Source Defense
  • DialerAI
    4.8 out of 5 stars 5 Ratings
    Visit Website for DialerAI
  • Elation Health
    4.1 out of 5 stars 90 Ratings
    Visit Website for Elation Health
AlphaGenome:

About

AlphaGenome is a Google DeepMind API and Python toolkit for computational genomics research. Researchers submit DNA sequences or genetic variants to obtain model predictions about gene expression, RNA splicing, chromatin accessibility, transcription-factor binding, histone marks, and genome contacts. The API supports variant scoring and analyses of genomic regions in human and mouse data, with tutorials and reference materials for programmatic workflows. It can help researchers investigate how genetic changes may affect gene regulation and prioritize hypotheses for further study. Access is provided through a hosted API, with a Python package for local client-side use and notebook examples. AlphaGenome is intended for research and is not validated or approved for clinical or diagnostic use; its predictions should not be treated as clinical results.
Genome Analysis Toolkit (GATK):

About

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data. Its scope is now expanding to include somatic short variant calling and to tackle copy number (CNV) and structural variation (SV). In addition to the variant callers themselves, the GATK also includes many utilities to perform related tasks such as processing and quality control of high-throughput sequencing data and bundles the popular Picard toolkit. These tools were primarily designed to process exomes and whole genomes generated with Illumina sequencing technology, but they can be adapted to handle a variety of other technologies and experimental designs.
AlphaGenome:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Genome Analysis Toolkit (GATK):

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
AlphaGenome:

Audience

Computational biologists, genomics researchers, and research teams using programmatic DNA-sequence and genetic-variant analysis.
Genome Analysis Toolkit (GATK):

Audience

Researchers wanting a solution to analyze, manage, and handle genome data
AlphaGenome:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Genome Analysis Toolkit (GATK):

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
AlphaGenome:

API

Offers API Supported
Genome Analysis Toolkit (GATK):

API

Offers API Not Supported
AlphaGenome:

Screenshots and Videos

Genome Analysis Toolkit (GATK):

Screenshots and Videos

AlphaGenome:

Pricing

Free for non-commercial research use, subject to terms. Commercial research access is in private preview; commercial and enterprise workflows are also offered through Google Cloud.
Free Version Supported
Free Trial Not Supported
Genome Analysis Toolkit (GATK):

Pricing

Free
Free Version Supported
Free Trial Not Supported
AlphaGenome:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Genome Analysis Toolkit (GATK):

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
AlphaGenome:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
Genome Analysis Toolkit (GATK):

Training

Documentation Supported
Webinars Supported
Live Online Not Supported
In Person Not Supported
AlphaGenome:

Company Information

Google DeepMind
Founded: 2010
United Kingdom
deepmind.google/science/alphagenome/
Genome Analysis Toolkit (GATK):

Company Information

Broad Institute
United States
gatk.broadinstitute.org/hc/
AlphaGenome:

Alternatives

AlphaGenome 2

AlphaGenome 2

Google DeepMind
Genome Analysis Toolkit (GATK):

Alternatives

AlphaGenome:
Genome Analysis Toolkit (GATK):
AlphaGenome:
VarSeq

VarSeq

Golden Helix
Genome Analysis Toolkit (GATK):
VarSeq

VarSeq

Golden Helix
AlphaGenome:
GenomeStudio

GenomeStudio

Illumina
Genome Analysis Toolkit (GATK):
AlphaGenome:
XetaBase

XetaBase

Zetta Genomics
Genome Analysis Toolkit (GATK):
Emedgene

Emedgene

Illumina
AlphaGenome:

Categories

Genome Analysis Toolkit (GATK):

Categories

AlphaGenome:

Integrations

Docker Not Supported
Google Antigravity Supported
Google Cloud Platform Supported
Google Colab Supported
Genome Analysis Toolkit (GATK):

Integrations

Docker Supported
Google Antigravity Not Supported
Google Cloud Platform Not Supported
Google Colab Not Supported
AlphaGenome:
Claim AlphaGenome and update features and information
Claim AlphaGenome and update features and information
Genome Analysis Toolkit (GATK):
Claim Genome Analysis Toolkit (GATK) and update features and information
Claim Genome Analysis Toolkit (GATK) and update features and information