AlphaGenome

AlphaGenome

Google DeepMind
AlphaGenome Galaxy

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AlphaGenome:

About

AlphaGenome is a Google DeepMind API and Python toolkit for computational genomics research. Researchers submit DNA sequences or genetic variants to obtain model predictions about gene expression, RNA splicing, chromatin accessibility, transcription-factor binding, histone marks, and genome contacts. The API supports variant scoring and analyses of genomic regions in human and mouse data, with tutorials and reference materials for programmatic workflows. It can help researchers investigate how genetic changes may affect gene regulation and prioritize hypotheses for further study. Access is provided through a hosted API, with a Python package for local client-side use and notebook examples. AlphaGenome is intended for research and is not validated or approved for clinical or diagnostic use; its predictions should not be treated as clinical results.
Galaxy:

About

Galaxy is an open source, web-based platform for data-intensive biomedical research. If you are new to Galaxy start here or consult our help resources. You can install your own Galaxy by following the tutorial and choosing from thousands of tools from the tool shed. This instance of Galaxy is utilizing infrastructure generously provided by the Texas Advanced Computing Center. Additional resources are provided primarily on the Jetstream2 cloud via ACCESS, and with support from the National Science Foundation. Quantify, visualize, and summarize mismatches in deep sequencing data. Build maximum-likelihood phylogenetic trees. Phylogenomic/evolutionary tree construction from multiple sequences. Merge matching reads into clusters with TN-93. Remove sequences from a reference that are within a given distance of a cluster. Perform maximum-likelihood estimation of gene essentiality scores.
AlphaGenome:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Galaxy:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
AlphaGenome:

Audience

Computational biologists, genomics researchers, and research teams using programmatic DNA-sequence and genetic-variant analysis.
Galaxy:

Audience

Researchers and professionals in need of a tool to manage their biomedical research data
AlphaGenome:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Galaxy:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
AlphaGenome:

API

Offers API Supported
Galaxy:

API

Offers API Supported
AlphaGenome:

Screenshots and Videos

Galaxy:

Screenshots and Videos

AlphaGenome:

Pricing

Free for non-commercial research use, subject to terms. Commercial research access is in private preview; commercial and enterprise workflows are also offered through Google Cloud.
Free Version Supported
Free Trial Not Supported
Galaxy:

Pricing

Free
Free Version Supported
Free Trial Not Supported
AlphaGenome:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Galaxy:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
AlphaGenome:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
Galaxy:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
AlphaGenome:

Company Information

Google DeepMind
Founded: 2010
United Kingdom
deepmind.google/science/alphagenome/
Galaxy:

Company Information

Galaxy
United States
usegalaxy.org
AlphaGenome:

Alternatives

AlphaGenome 2

AlphaGenome 2

Google DeepMind
Galaxy:

Alternatives

AlphaGenome:
Galaxy:
AlphaGenome:
VarSeq

VarSeq

Golden Helix
Galaxy:
AlphaGenome:
GenomeStudio

GenomeStudio

Illumina
Galaxy:
AlphaGenome:
XetaBase

XetaBase

Zetta Genomics
Galaxy:
Evo 2

Evo 2

Arc Institute
AlphaGenome:

Categories

Galaxy:

Categories

AlphaGenome:

Integrations

Arch Not Supported
CoinRoutes Not Supported
Google Antigravity Supported
Google Cloud Platform Supported
Google Colab Supported
Inn-Flow Not Supported
Lybra Assistant Not Supported
Galaxy:

Integrations

Arch Supported
CoinRoutes Supported
Google Antigravity Not Supported
Google Cloud Platform Not Supported
Google Colab Not Supported
Inn-Flow Supported
Lybra Assistant Supported
AlphaGenome:
Claim AlphaGenome and update features and information
Claim AlphaGenome and update features and information
Galaxy:
Claim Galaxy and update features and information
Claim Galaxy and update features and information