AlphaGenome

AlphaGenome

Google DeepMind
AlphaGenome Bioconductor

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AlphaGenome:

About

AlphaGenome is a Google DeepMind API and Python toolkit for computational genomics research. Researchers submit DNA sequences or genetic variants to obtain model predictions about gene expression, RNA splicing, chromatin accessibility, transcription-factor binding, histone marks, and genome contacts. The API supports variant scoring and analyses of genomic regions in human and mouse data, with tutorials and reference materials for programmatic workflows. It can help researchers investigate how genetic changes may affect gene regulation and prioritize hypotheses for further study. Access is provided through a hosted API, with a Python package for local client-side use and notebook examples. AlphaGenome is intended for research and is not validated or approved for clinical or diagnostic use; its predictions should not be treated as clinical results.
Bioconductor:

About

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists. Resources to maximize the potential of Bioconductor. From basic functionalities to advanced features, our tutorials, guides, and documentation have you covered. Bioconductor uses the R statistical programming language and is open source and open development. It has two releases each year and an active user community. Bioconductor provides Docker images for every release and provides support for Bioconductor use in AnVIL. Founded in 2001, Bioconductor is an open-source software project widely used in bioinformatics and biomedical research. It hosts over 2,000 R packages contributed by over 1,000 developers, with over 40 million downloads per year. Bioconductor has been cited in more than 60,000 scientific publications.
AlphaGenome:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Bioconductor:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
AlphaGenome:

Audience

Computational biologists, genomics researchers, and research teams using programmatic DNA-sequence and genetic-variant analysis.
Bioconductor:

Audience

Labs looking for a solution to improve their bioinformatics and biomedical research
AlphaGenome:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Bioconductor:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
AlphaGenome:

API

Offers API Supported
Bioconductor:

API

Offers API Not Supported
AlphaGenome:

Screenshots and Videos

Bioconductor:

Screenshots and Videos

AlphaGenome:

Pricing

Free for non-commercial research use, subject to terms. Commercial research access is in private preview; commercial and enterprise workflows are also offered through Google Cloud.
Free Version Supported
Free Trial Not Supported
Bioconductor:

Pricing

Free
Free Version Supported
Free Trial Not Supported
AlphaGenome:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Bioconductor:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
AlphaGenome:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
Bioconductor:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
AlphaGenome:

Company Information

Google DeepMind
Founded: 2010
United Kingdom
deepmind.google/science/alphagenome/
Bioconductor:

Company Information

Bioconductor
Founded: 2001
United States
www.bioconductor.org
AlphaGenome:

Alternatives

AlphaGenome 2

AlphaGenome 2

Google DeepMind
Bioconductor:

Alternatives

Partek Flow

Partek Flow

Partek
AlphaGenome:
Bioconductor:
AlphaGenome:
VarSeq

VarSeq

Golden Helix
Bioconductor:
AlphaGenome:
GenomeStudio

GenomeStudio

Illumina
Bioconductor:
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench

QIAGEN Digital Insights
AlphaGenome:
XetaBase

XetaBase

Zetta Genomics
Bioconductor:
AlphaGenome:

Categories

Bioconductor:

Categories

AlphaGenome:

Integrations

Docker Not Supported
Google Antigravity Supported
Google Cloud Platform Supported
Google Colab Supported
R Not Supported
Bioconductor:

Integrations

Docker Supported
Google Antigravity Not Supported
Google Cloud Platform Not Supported
Google Colab Not Supported
R Supported
AlphaGenome:
Claim AlphaGenome and update features and information
Claim AlphaGenome and update features and information
Bioconductor:
Claim Bioconductor and update features and information
Claim Bioconductor and update features and information