AlphaGenome

AlphaGenome

Google DeepMind
AlphaGenome BaseSpace Sequence Hub

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AlphaGenome:

About

AlphaGenome is a Google DeepMind API and Python toolkit for computational genomics research. Researchers submit DNA sequences or genetic variants to obtain model predictions about gene expression, RNA splicing, chromatin accessibility, transcription-factor binding, histone marks, and genome contacts. The API supports variant scoring and analyses of genomic regions in human and mouse data, with tutorials and reference materials for programmatic workflows. It can help researchers investigate how genetic changes may affect gene regulation and prioritize hypotheses for further study. Access is provided through a hosted API, with a Python package for local client-side use and notebook examples. AlphaGenome is intended for research and is not validated or approved for clinical or diagnostic use; its predictions should not be treated as clinical results.
BaseSpace Sequence Hub:

About

Data management and simplified bioinformatics for labs getting started and for rapidly scaling next-generation sequencing (NGS) operations. As a key component of the BaseSpace Suite, BaseSpace Sequence Hub is a direct extension of your Illumina instruments. Encrypted data flow from the instrument into BaseSpace Sequence Hub, enabling you to manage and analyze your data easily with a curated set of analysis apps. BaseSpace Sequence Hub is powered by Amazon Web Services (AWS). Offers a security-first environment. Enables you to set up runs and monitor instrument run quality. Promotes efficiency by converting sequencing data to a standard format and streaming directly to the cloud. Provides access to computing resources without the capital expenditure of in-house infrastructure. Increases organizational productivity with easy access to a multitude of genomic analysis apps (provided by you, Illumina, or third parties).
AlphaGenome:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
BaseSpace Sequence Hub:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
AlphaGenome:

Audience

Computational biologists, genomics researchers, and research teams using programmatic DNA-sequence and genetic-variant analysis.
BaseSpace Sequence Hub:

Audience

Teams looking for a tool to enable secure, audit-controlled collaboration among research groups
AlphaGenome:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
BaseSpace Sequence Hub:

Support

Phone Support Supported
24/7 Live Support Not Supported
Online Supported
AlphaGenome:

API

Offers API Supported
BaseSpace Sequence Hub:

API

Offers API Supported
AlphaGenome:

Screenshots and Videos

BaseSpace Sequence Hub:

Screenshots and Videos

AlphaGenome:

Pricing

Free for non-commercial research use, subject to terms. Commercial research access is in private preview; commercial and enterprise workflows are also offered through Google Cloud.
Free Version Supported
Free Trial Not Supported
BaseSpace Sequence Hub:

Pricing

No information available.
Free Version Not Supported
Free Trial Supported
AlphaGenome:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
BaseSpace Sequence Hub:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
AlphaGenome:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
BaseSpace Sequence Hub:

Training

Documentation Supported
Webinars Supported
Live Online Supported
In Person Supported
AlphaGenome:

Company Information

Google DeepMind
Founded: 2010
United Kingdom
deepmind.google/science/alphagenome/
BaseSpace Sequence Hub:

Company Information

Illumina
United States
www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub.html
AlphaGenome:

Alternatives

AlphaGenome 2

AlphaGenome 2

Google DeepMind
BaseSpace Sequence Hub:

Alternatives

AlphaGenome:
BaseSpace Sequence Hub:
AlphaGenome:
VarSeq

VarSeq

Golden Helix
BaseSpace Sequence Hub:
AlphaGenome:
GenomeStudio

GenomeStudio

Illumina
BaseSpace Sequence Hub:
AlphaGenome:
XetaBase

XetaBase

Zetta Genomics
BaseSpace Sequence Hub:
GenomeStudio

GenomeStudio

Illumina
AlphaGenome:

Categories

BaseSpace Sequence Hub:

Categories

AlphaGenome:

Integrations

Amazon Web Services (AWS) Not Supported
Google Antigravity Supported
Google Cloud Platform Supported
Google Colab Supported
Illumina DRAGEN Secondary Analysis Not Supported
Pluto Not Supported
Scispot Not Supported
BaseSpace Sequence Hub:

Integrations

Amazon Web Services (AWS) Supported
Google Antigravity Not Supported
Google Cloud Platform Not Supported
Google Colab Not Supported
Illumina DRAGEN Secondary Analysis Supported
Pluto Supported
Scispot Supported
AlphaGenome:
Claim AlphaGenome and update features and information
Claim AlphaGenome and update features and information
BaseSpace Sequence Hub:
Claim BaseSpace Sequence Hub and update features and information
Claim BaseSpace Sequence Hub and update features and information