Best Billing and Invoicing Software for Shopify
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Compare the Top Billing and Invoicing Software that integrates with Shopify as of December 2025
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This a list of Billing and Invoicing software that integrates with Shopify. Use the filters on the left to add additional filters for products that have integrations with Shopify. View the products that work with Shopify in the table below.
What is Billing and Invoicing Software for Shopify?
Billing and invoicing software allows businesses to easily manage their customer account balances, track payments, and generate invoices. It can be used to streamline the accounts receivable process and save time by eliminating manual data entry. Additionally, it can provide financial reporting capabilities to help businesses make more informed decisions. Compare and read user reviews of the best Billing and Invoicing software for Shopify currently available using the table below. This list is updated regularly.
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1
FreshBooks
FreshBooks
Tired of chasing invoices and juggling paperwork? FreshBooks simplifies your entire billing process. Create professional, branded invoices, send them to clients, and easily track payment status. With FreshBooks, you'll save time on admin and get paid up to 2x faster. Try it Free or save 70% on FreshBooks Now.Starting Price: $6.30/month -
2
Xero
Xero
Xero's invoicing software takes the work out of billing – and gives your customers a smooth and professional experience through both the desktop and mobile invoice app. Features include personalized invoices, digital payment options, automated reminders, and more.Starting Price: $20/month -
3
Odoo
Odoo
Odoo is a fully integrated, customizable, open-source software packed with hundreds of expertly designed business applications. Odoo’s intuitive database is able to meet a majority of business needs, such as: CRM, Sales, Project, Manufacturing, Inventory, and Accounting, just to name a few. Odoo is an all-in-one software solution designed to meet the needs of companies, regardless of their size (or budget). The unbeatable, seamless nature of Odoo helps businesses become more efficient by reducing redundant manual processes, which helps companies save countless hours of labor. Every module is interconnected to provide a fully-integrated experience from app to app, and users can automate many processes that would’ve otherwise required manual inputs into multiple applications. Odoo keeps all business functions in one place, allowing teams to collaborate with other departments from one unified platform in the most efficient way possible.Starting Price: $25.00/month/user -
4
Plus & Minus
Plus & Minus Software
Built around a single-file system, Plus & Minus is an integrated enterprise resource planning (ERP) financial platform. Plus & Minus has collaborative tools for accounting, purchasing, managing sales, and reporting operations. With Plus & Minus, users are able to manage core finance operations, track sales operations, generate custom business reports, and monitor business documents. Plus & Minus enables users to deploy on-premise or in the cloud.Starting Price: $1000.00/one-time/user -
5
QuickBooks Online
Intuit
QuickBooks Online is the most popular accounting software in the world. QuickBooks Online makes accounting easy. Make tracking receipts, income, bank transactions, and more feel simple with the #1 small business accounting software. Snap photos of your receipts and link them to expenses right from your phone. Our agents are ready and available to answer all your QuickBooks questions. Use the apps you know and love to keep your business running smoothly. QuickBooks Online works on your PC, Mac, tablets, and phones. Click the link above to get a 30 day free trial and 50% off your first 3 months. More than accounting software. QuickBooks helps you track income, expenses, and stay ready for taxes. Customers find on average $3,534 in tax savings per year. Need more help? QuickBooks Live helps you stay organized and be ready for tax time. QuickBooks comes with a mobile app that help you run your business on the go—anytime, anywhere.Starting Price: $9/month (normally $15/month) -
6
Avaza
Avaza Software
Avaza is a cloud-based professional services automation tool that streamlines project collaboration, resource scheduling, time and expense tracking, retainer management, and invoicing. Trusted by teams across industries, it combines essential business functions into a single, efficient platform. Avaza’s all-in-one approach removes the need for multiple subscriptions and duplicate workflows. By integrating project management, financials, and retainer functionality, it provides businesses with real-time insights into project profitability, employee utilization, and retainer usage, all in one unified system. The retainer feature simplifies ongoing client engagements by automating payments and applying credits for completed work. This ensures seamless billing, efficient resource allocation, and greater transparency. Available across desktop, tablet, and mobile devices, Avaza ensures true on-the-go operational management for companies seeking flexibility and efficiency.Starting Price: $11.95/month -
7
Synder
Synder
One of the best accounting software for small businesses, Synder is the right solution for those who seek high-quality service, 24/7 support, and advanced automated features. After you connect all of your sales channels and payment platforms, you will be provided with automatic bookkeeping, which guarantees precise and error-free synchronization of your transaction data, categorization, and live data reconciliation within a single interface. Synder makes accurate records of your payment data without duplicates. Detailed and 100% correct Profit and Loss Reports contain additional helpful information to analyze your business’ cash flow and budget planning. The software runs smoothly and automatically, and there is no need to log in to get it done. Synder lets you apply sales taxes, taxes based on location, shipping address, product name, etc. Recurring invoices remind customers of regular payments. Synder offers a free trial and a demo to learn more about this breakthrough software.Starting Price: $39.99 per month -
8
HoneyBook
HoneyBook
HoneyBook helps creative entrepreneurs and freelancers book more clients, manage projects and get paid all in one place. With their business management software, you can automate your busy work and stay on top of all your to-dos, saving time and money so you can grow your business. Its like your own personal assistant. This all-in-one management platform streamlines business processes, from first inquiry to final payment, so business owners can spend less time on administrative work and more time focusing on what got them passionate about their business in the first place. With their proposals, invoices, contracts, payments, and scheduling at your fingertips, HoneyBook gives you everything you need to give clients an unforgettable experience.Starting Price: $19 monthly ($16 annually) -
9
Keap
Keap
Find out how Keap helps you get organized, automate daily tasks and close more leads. Keap, formerly known as Infusionsoft, is the all-in-one CRM, designed for small business owners. The smarter way for small businesses to do great work. Keap organizes your client information & daily work in one place, freeing you up from repetitive tasks. All new and existing leads are in one place. All of your client information is accessible anywhere, 24/7. Take the friction out of winning work with hassle-free scheduling and easy quoting. Get out of bill collecting and get paid faster by tracking outstanding invoices. Deliver the kind of service that earns you referrals, leading to long-term relationships (and business).Starting Price: $40 per month -
10
Stripe
Stripe
The new standard in online payments. Stripe is the best software platform for running an internet business. We handle billions of dollars every year for forward-thinking businesses around the world. Stripe builds the most powerful and flexible tools for internet commerce. Whether you’re creating a subscription service, an on-demand marketplace, an e-commerce store, or a crowdfunding platform, Stripe’s meticulously designed APIs and unmatched functionality help you create the best possible product for your users. Millions of the world’s most innovative technology companies are scaling faster and more efficiently by building their businesses on Stripe. We believe that payments is a problem rooted in code, not finance. We obsessively seek out elegant, composable abstractions that enable robust, scalable, flexible integrations. Because we eliminate needless complexity and extraneous details, you can get up and running with Stripe in just a couple of minutes.Starting Price: 2.9% + 30¢ per charge -
11
Chargebee
Chargebee
Chargebee is a recurring billing and subscription management tool that helps SaaS and SaaS-like businesses streamline Revenue Operations. Chargebee integrates with the leading payment gateways like Stripe, Braintree, PayPal etc. around the world to let you automate recurring payment collection along with invoicing, taxes, accounting, email notifications, SaaS Metrics and customer management. Chargebee handles all your crucial workflows from lead to ledger with power-packed integrations that include Salesforce, Xero, Quickbooks, Avalara, Slack, among others. Deflect cancellations at scale straight from Chargebee with a best-of-breed solution, Chargebee Retention, that provides personalized experiences that get results. Run experiments based on customer and subscription attributes taken straight from Chargebee to ensure you provide a personalized and relevant cancel experience.Starting Price: $299/month -
12
Invoice2go
Invoice2go
Invoice2go is a mobile-first intuitive Invoicing Manager that strives to help small business owners get paid faster. With powerful features that include Pre-set Invoice Templates, Expense Tracking, and Payment Portal, users can quickly submit Estimates and Invoices to prospective and current clients. Receiving users can access any send document from a web-based or mobile device to view, accept and submit payment. Just like that.Starting Price: $25.00/year -
13
Fiverr Workspace
Fiverr
Fiverr Workspace, formerly known as AND.CO, is a platform designed to streamline and automate various back-office tasks for freelancers and small business owners. It provides tools for invoicing, contract management, time tracking, task prioritization, and payments. The service helps users efficiently manage their businesses by simplifying administrative work, tracking earnings and expenses, and generating reports. With an integrated dashboard, users can see a complete overview of both Fiverr and non-Fiverr projects, ensuring smooth business operations and financial management.Starting Price: $18/month -
14
SAP Business ByDesign
Navigator Business Solutions
The right ERP system for Life Sciences, Consumer Products & Distribution companies that are focused on growth and their systems are holding them back. Built for early-stage to mid-market companies that plan to grow. SAP Business ByDesign is a complete, cloud-based ERP solution for fast-growing, start-up to mid-market businesses and subsidiaries that want to scale without the complexity and unnecessary cost. With SAP Business ByDesign, you get an affordable way to manage your entire business as an integrated whole, from accounting and financials, purchasing, inventory, sales, and customer support, all the way to operations, logistics, project management, and human resources. 36 End-to-End Process Scenarios built-in Operational Performance Sourcing & Procurement Project Management Reporting & Analytics Accounting & Finance CRM, Sales, & Marketing Service Support Human resources (Suite-in-a-Box)Starting Price: $22 per/user/month -
15
Stripe Billing
Stripe
Stripe Billing is the fastest way for your business to bill customers with subscriptions or invoices. Capture more revenue, support new products or business models, and accept recurring payments globally. Start collecting one-time or recurring payments via card, ACH, and other popular payment methods instantly. Test and roll out changes via our API or right in the Dashboard. Flexible billing logic for everything from per-seat pricing to metered billing out of the box. Support for coupons, free trials, prorations, add-ons, and overages is built-in. Reduce churn with smart retries, automated failed payment emails, and an automatic card updater. In 2021, Stripe Billing helped businesses recover 38% of failed payments on average. Understand your growth, churn, and financial health with automated reporting and revenue recognition. Easily sync billing and payments data with the rest of your workflows. -
16
Maxio
Maxio
Maxio empowers growing B2B SaaS leaders to monetize their business and uncover critical financial insights in an unpredictable market. Natural growth isn’t a straight shot; it ebbs and flows along with the market. Wherever you are on your growth journey, Maxio gives you the tools to navigate your business through every inflection point. You need a system that can support your monetization model (no matter how simple or complex) without sacrificing the agility required to meet changing market demands. With Maxio, you’re always striking the right balance. Don’t let your systems hinder your ability to go to market. Maxio sits at the heart of your tech stack, automating the manual tasks that exist between your CRM, GL, and reporting tools. To navigate through an ever-changing market, you need insights today—not two weeks from now. Maxio gives you the ability to answer your toughest business questions quickly and accurately. -
17
Teamleader
Teamleader
As an entrepreneur, you have your hands full with running your business and everything that comes with it. That's why Teamleader makes your work easier and your mind free. With our business software, you can create quotes, manage customer relationships, invoice, and plan work, all in one place. This ensures that all relevant information is kept from being scattered across different inboxes, Excel sheets, and software. The result is a perfect overview of your sales opportunities, projects, and payments and, perhaps even more crucially, a sharp picture of your business's performance. Over 15,000 entrepreneurs and their teams hand over paperwork to Teamleader's business software. Get more done with less hassle. Sounds good?Starting Price: $25.00/month/user -
18
Dinero
Visma Dinero
Get started with Dinero for free now - you can send your first invoice in less than two minutes. Dinero is for you who would rather spend time on your company's core product than on accounting. We work to make your accounting life much easier. Income, expenses, profit, future payments, VAT due and everything else related to your accounts - stored and presented to you simply in Dinero. Keep accounts and keep track of your company's finances when you're on the go. Take a picture of your purchase voucher and upload it to the Dinero cloud completely safe. Then it's over with physical, curly appendages that get lost or fly away from you in the wind. Get money at the checkout easily and conveniently. Let customers pay you with payment cards such as Visa, Mastercard, Maestro and Visa Electron - or with MobilePay.Starting Price: $245 per month -
19
KashFlow
IRIS Software Group
Keep your accounts under control with KashFlow, an award-winning, cloud-based accounting software. Designed specifically for sole traders and growing businesses, KashFlow makes accounting painless and hassle-free by offering a jargon-free and feature-rich platform that is loved and used even by non-accountants. From quoting and invoicing, to payroll and reporting, KashFlow’s accounting software keeps it simple.Starting Price: $7.00/month/user -
20
Subscription DNA
Subscription DNA, LLC.
Automate Your Recurring Billing Business with Subscription DNA® Subscription Billing, Membership & Paywall Software. Subscription DNA's powerful SaaS platform creatively integrates subscription billing, robust subscription management, paywalls and authentication. With our customized front-end options, customers can login and manage their own accounts right from your site. With our branded administrative console you can quickly manage accounts, automate recurring invoicing, analyze reports, communicate with targeted user groups, process transactions, generate payment requests, track member login statistics and much much more. With our hands-on team approach and flexibility, you can leverage ongoing support and custom development services on your terms.Starting Price: $199 per month -
21
billwerk
billwerk
Subscription Management, Recurring Billing and Payments radically automated for your European subscription business. The platform complies with European Standards EU-DSGVO and GOBD, has a strong REST API and offers a variety of ready-to-use integrations to European third-party vendors. With billwerk your subscription revenues grow faster, your costs are minimized and You steadily benefit from the high product innovation rate of othe platform.Starting Price: euro 139/month -
22
AccelGrid
AccelGrid Technologies Inc.
AccelGrid is a suite of seamlessly integrated modules that include Sales, CRM, Inventory, Accounting, Purchasing, and more. AccelGrid helps businesses eliminate data re-entry and increase accuracy by offering an integrated platform to manage all business functions. The solution is web-based and fully customizable to suit specific business processes and workflows.Starting Price: $49/user/month -
23
MONEI
Microapps sl
MONEI makes everything easy MONEI is a payment gateway that allows you to accept payments either online and offline. MONEI can be integrated directly into your website or online store with just one simple line of code (or not even that). MONEI protects you against fraud, can issue refunds and helps your business succeed. It’s the simplest and cheapest way to start making money on your site. Moving money with ease Move your money online transparently and securely — no paperwork or compliance when accepting payments to start a business. Integrating MONEI as your payment gateway will help you boost your conversion rates. Our features and capabilities are hard to beat. Insanely Simple We designed MONEI in a way that anyone can use it. Today you, tomorrow your six years old child on their way to conquer the business world. Few clicks here and there, and that's all there is to it.Starting Price: $0 -
24
Mollie
Mollie
Mollie is a money management platform that powers growth for over 250,000 businesses – from startups to enterprises. It's a single platform to get paid and simplify your finances, with online and in-person payments, subscriptions, financing, reconciliation, invoicing, and fraud prevention tools. Get started in minutes with transparent pricing, no hidden fees, and no lock-in contract.Starting Price: €0.25 per transaction -
25
paysley
paysley
Paysley allows you to send secure payment requests to your customers using text messaging, picture messaging, and email. Your customers can also access any custom payment page on their mobile devices by scanning a unique QR code that you can display anywhere. Your customers do not need to download an app or register to make a payment. Paysley offers the most straightforward and convenient way to make payments. No card readers or special devices required. Cardholders make payments from their own mobile devices. No customer app download, no account registration, and no password, or login. No redirect to a service provider website. Paysley is a direct, tokenized payment option. You never have to ask for a customer’s card information again. Paysley is secure and your business is automatically PCI compliant. Upload and manage your customer information directly on your Paysley Portal. Your customer database isn’t limited to just contact information.Starting Price: $15 per month -
26
WISO MeinBüro
Buhl Data Service
The flexible online office software for sustainable business success. Write convincing offers, tax office-compliant invoices and legally secure reminders right away. Easily do your accounting at the same time. Plan, manage and control all business activities and make your day-to-day work easier. Companies that create more time for the execution of services and the sale of products and thus want to make everyday work easier should use WISO MeinBüro. With the comprehensive functionalities of our intelligent office software, we support companies in the planning, management and control of all company activities. WISO MeinBüro has a large range of functions that facilitate the typical office tasks of companies through intelligent and innovative automatisms and interlocking. This saves time on the one hand and costs on the other. Simplify the handling of every order. Whether Shopify or Shopware connection, with WISO MeinBüro Web you always have an overview of all e-commerce activities.Starting Price: €6 per month -
27
Quipu
Quipu
At Quipu we have been making accounting for small businesses and freelancers easier, automated and paperless for more than 8 years. Check in the Overview the updated financial summary of your business, the synchronized bank accounts, the analysis of income and expenses in a detailed way. Create customizable invoices and estimates using our templates and save time with our auto-complete feature. Digitize your income and expenses in an instant with our OCR system, just upload an image from your mobile, upload the file to Quipu or send it by email. Don't waste time filling in the tax forms, Quipu does it automatically for you, without errors. Synchronize your bank, view all your accounts in one place and reconcile bank movements and invoices in a few clicks. Your sales cycle will always be controlled and referenced. You can quickly see what state your documents are in and easily manage them.Starting Price: €12 per month -
28
Sufio
Sufio
Let Sufio automatically create invoices for every order in your store. Have time to grow your business. Sufio invoices are compliant with legislation in Spain, Mexico, Argentina, Colombia, Latin America, and over 50 countries worldwide. Sell to both businesses and consumers without worries. Our app helps you charge correct taxes in your store. Send invoices that help you stand out and build a powerful brand. Sufio invoices are created by professional print designers. Sufio automatically creates invoices when orders are created, paid, or fulfilled in your store. Invoices can be automatically sent to customers by email, or customers can download them from your store. Sufio helps you get paid faster by allowing your customers to pay their invoices online. Create your own unique invoice by customizing colors and elements of your template. Create invoices in the same currency your customers used while shopping in your store.Starting Price: $19 per month -
29
MYOB
MYOB
MYOB Business is a comprehensive cloud-based accounting and business management software designed to streamline financial and operational processes for small to medium-sized enterprises (SMEs). It offers a wide range of features, including invoicing, expense tracking, payroll management, inventory control, and tax compliance. With real-time financial reporting and user-friendly dashboards, MYOB Business provides valuable insights to help business owners make informed decisions. The platform supports seamless integrations with banking systems, payment gateways, and other business tools, enabling automation and reducing manual tasks. MYOB Business is known for its scalability, catering to growing businesses by offering flexible pricing plans and customizable features to meet diverse industry needs.Starting Price: $11/month -
30
Paycove
Paycove
Paycove is an automated quoting, invoicing, and payments solution that integrates seamlessly with CRM and accounting software. Quickly create professional looking quotes and invoices that your customers can pay easily. Give your team the autonomy to quickly create consistent quotes and invoices without manual data entry. Scale and automate your quote and invoice workflow across your company's sales and finance teams. Paycove automatically syncs with data from your CRM to ensure accurate information across your sales and billing process for even the most complex projects. Create personalized templates that show off your brand. Include customer and product information specific to each deal. Whether you have a team of 5 or 500 employees, Paycove automates the flow of information between sales, project managers and accounts payable.Starting Price: $9 per user per month
