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rxncon

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Description

The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

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Features

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

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Additional Project Details

Languages

English

Intended Audience

Science/Research, Advanced End Users

Programming Language

Python, JavaScript

Registered

2010-12-20

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