The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.

Features

  • Automatic visualiztion with Cytoscape.
  • Automatic generation of rule based models for BioNetGen.
  • Storage of biological facts that can be used for modelling.

Project Activity

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Categories

Bio-Informatics

License

GNU Library or Lesser General Public License version 3.0 (LGPLv3)

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Additional Project Details

Languages

English

Intended Audience

Science/Research, Advanced End Users

Programming Language

Python, JavaScript

Database Environment

SQL-based

Related Categories

Python Bio-Informatics Software, JavaScript Bio-Informatics Software

Registered

2010-12-20
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