xPyder PyMOL Plugin Icon

xPyder PyMOL Plugin

Analyze and visualize coupled residues and their networks in proteins

5.0 Stars (4)
19 Downloads (This Week)
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Description

xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level.

xPyder PyMOL Plugin Web Site

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User Reviews

  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    xpyder is fast and stable

    Posted 02/18/2013
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    deseo bajar xpyder gratis

    Posted 01/23/2013
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Reliable and runs smoothly

    Posted 12/22/2012
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Fast and simple.

    Posted 11/01/2012
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Additional Project Details

User Interface

Tk

Programming Language

Python

Registered

2012-06-14

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