README.txt for xSSAlite
xSSA is a Mathematica package that implements Dan Gillespie's
Stochastic Simulation Algorithm for biochemical simulations.
Reference: Gillespie, J. Phys.Chem 81(25):2340 (1977)
Input format is compatible with xCellerator reaction schema,
but the package can be used independently of xCellerator.
xSSAlite implements all of the mass-action arrows in Cellerator, and
does not implement other reactions such as MM, Hill, or GMWC.
The older files "SSA" only handle arrows such as A+B->P+Q but
cannot deal with the more complex Cellerator arrows, and is
not compatible with Cellzilla2D.
The latest test version is the file xSSA-version-date.zip listed above.
There is a mathematica notebook install-xSSAlite.nb in the zip file.
See the html folder of the zip file.
LGPL; See http://creativecommons.org/licenses/LGPL/2.1/
A copy of this license is provided in the files LICENSE.html