Whole-Genome Shotgun Assembler - Browse /OldFiles at SourceForge.net

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size	InfoDownloads / Week
Parent folder
TAMPAResults.tar	2005-01-25	5.5 MB	0
TAMPAResults_1.0.tar	2005-01-25	7.1 MB	0
Totals: 2 Items		12.6 MB	0

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas

The database for AI-powered applications.

MongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.

Start Free

Simple, Secure Domain Registration

Get your domain at wholesale price. Cloudflare offers simple, secure registration with no markups, plus free DNS, CDN, and SSL integration.

Register or renew your domain and pay only what we pay. No markups, hidden fees, or surprise add-ons. Choose from over 400 TLDs (.com, .ai, .dev). Every domain is integrated with Cloudflare's industry-leading DNS, CDN, and free SSL to make your site faster and more secure. Simple, secure, at-cost domain registration.

Recommended Projects

Celera Genome Browser
The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006.
Vancouver Short Read Analysis Package
This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
INTEGRATE
INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
MIRA
MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
TraceTuner
DNA sequencing quality values, base calling and trace processing

Whole-Genome Shotgun Assembler Files

Get an email when there's a new version of Whole-Genome Shotgun Assembler