Downloadovercluster2 is a program to cluster subsequences of InterGenic Regions (IGRs). It clusters these subsequences based on the output of BLAST comparisons of the IGRs. overcluster2 has been used as part of a method to discover novel non-coding RNA classes.
overcluster2 was written by Zasha Weinberg. The basic method was one of the methods described here:
https://www.ncbi.nlm.nih.gov/pubmed/19340921
An example of the use of overcluster2 to find non-coding RNAs is here:
https://www.ncbi.nlm.nih.gov/pubmed/20230605
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