Download
PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/vcfhacks) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/vcfhacks/releases/latest).
(relatively) Simple to use commandline tools for the manipulation and analysis of VCF files, geared towards the identification of pathogenic mutations in Mendelian disease.
Features
- filter SNPs on minor allele frequency and/or SNP build
- filter on EVS minor allele frequency
- filter on allele frequency in other VCFs
- filter on samples
- find biallelic (compound het or homozygous) variants in one or more samples/families
- find de novo variants
- annotate gene information to VEP output
- write output summary to .xlsx spreadsheet
License
GNU General Public License version 3.0 (GPLv3)Follow vcfhacks
Other Useful Business Software
Gen AI apps are built with MongoDB Atlas
MongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of vcfhacks!