Download Latest Version
UniPyRangeSuite.py (2.4 kB)
Get an email when there's a new version of UniPyRange
| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| README.txt | 2015-03-01 | 947 Bytes | |
| UniPyRangeSuite.py | 2015-02-26 | 2.4 kB | |
| UniPyRange.py | 2015-02-22 | 337 Bytes | |
| Totals: 3 Items | 3.7 kB | 0 |
"UniPyRange Suite" Simple python script which saves you the pains of counting the amino acids/DNA bases in fasta files from the Uniprot and RefSeq Database (1, 2). Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID. - Requires BioPython (3) and Bioservices Package (4) (1) The UniProt Consortium UniProt: a hub for protein information Nucleic Acids Res. 43: D204-D212 (2015). (2) RefSeq: an update on mammalian reference sequences. Nucleic Acids Res. 2014 Jan 1;42(1):D756-63. (3) Cock PJ et al. Bioinformatics (2009) (4) Cokelaer et al, Bioinformatics (2013) How to: - Download UniPyRangeSuite.py - Open Terminal/Console and run script with "python UniPyRangeSuite.py"