T-lex

The T-lex package contains two pipelines. The T-lex pipeline calls presence/absence of known TE insertions using re-sequencing data. On top of the genotyping, this pipeline also allows to re-annotate TEs and discover traces of transposition events called Target Site Duplication (TSD).
The other T-lex pipeline discovers and annotates de novo TE insertions.

http://petrov.stanford.edu/cgi-bin/Tlex.html

Project Samples

The two T-lex pipelines: discovery/annotation/reannotation/population frequency estimates

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

BSD, Linux

Languages

English

Intended Audience

Education, Science/Research

User Interface

Non-interactive (Daemon)

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2012-08-14

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