| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| Test.match | 2013-04-17 | 21.2 MB | |
| GREEN.prep | 2013-04-17 | 41.4 MB | |
| Totals: 2 Items | 62.7 MB | 0 | |
NAME : TANGO AUTHORS : Daniel Alonso-Alemany ,Aurelien Barre and Stefano Beretta VERSION : 1.0 INSTALL : no installation procedure needed REQUIREMENT : require perl v5.1 + Getopt::Long LICENSE : see license file BUGS : ---------------------------------------------- TANGO is one of the most accurate tools for the taxonomic assignment of Next Generation Sequencing reads using multiple reference taxonomy. INPUT - A taxonomic file such as GreenGenes, RDP or NCBI (see help of the preprocess script) - A match files obtained from GEM softaware (http://algorithms.cnag.cat/wiki/The_GEM_library) OUTPUT - A result file with the assignation of each read to a node of the taxonomy SYNOPSIS Step 1 : generate precomputed matrix of scoring perl MakeMatrix.pl --limit <integer> Step 2 : preprocess the taxonomy file perl preprocess.pl --taxonomy-type <taxonomy_type> --taxonomy <taxonomy_file> --output <output_file> Step 3 : Assign the reads perl tango.pl --taxonomy <preprocessed_taxonomy> --matches <matches_file> [--q-value <q_parameter>] [--output <output_file>]