| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Example | 2013-04-17 | ||
| Taxonomy.pm | 2013-04-17 | 6.8 kB | |
| TaxoAssignment.pm | 2013-04-17 | 6.0 kB | |
| Taxonomies.pm | 2013-04-17 | 397 Bytes | |
| README | 2013-04-17 | 1.1 kB | |
| relabel.pl | 2013-04-17 | 1.5 kB | |
| tango.pl | 2013-04-17 | 2.5 kB | |
| preprocess.pl | 2013-04-17 | 2.3 kB | |
| RDP.pm | 2013-04-17 | 1.9 kB | |
| NCBI.pm | 2013-04-17 | 3.2 kB | |
| Newick.pm | 2013-04-17 | 6.9 kB | |
| MappingNCBI.pm | 2013-04-17 | 1.8 kB | |
| MappingRDP.pm | 2013-04-17 | 1.6 kB | |
| LICENSE_MIT | 2013-04-17 | 1.1 kB | |
| MakeMatrix.pl | 2013-04-17 | 604 Bytes | |
| MappingGREENGENES.pm | 2013-04-17 | 1.7 kB | |
| GREENGENES.pm | 2013-04-17 | 1.9 kB | |
| convertTaxonomy.pl | 2013-04-17 | 4.5 kB | |
| equalize.pl | 2013-04-17 | 4.7 kB | |
| contract.pl | 2013-04-17 | 5.3 kB | |
| convertMatches.pl | 2013-04-17 | 1.5 kB | |
| Totals: 21 Items | 57.3 kB | 0 |
NAME : TANGO AUTHORS : Daniel Alonso-Alemany ,Aurelien Barre and Stefano Beretta VERSION : 1.0 INSTALL : no installation procedure needed REQUIREMENT : require perl v5.1 + Getopt::Long LICENSE : see license file BUGS : ---------------------------------------------- TANGO is one of the most accurate tools for the taxonomic assignment of Next Generation Sequencing reads using multiple reference taxonomy. INPUT - A taxonomic file such as GreenGenes, RDP or NCBI (see help of the preprocess script) - A match files obtained from GEM softaware (http://algorithms.cnag.cat/wiki/The_GEM_library) OUTPUT - A result file with the assignation of each read to a node of the taxonomy SYNOPSIS Step 1 : generate precomputed matrix of scoring perl MakeMatrix.pl --limit <integer> Step 2 : preprocess the taxonomy file perl preprocess.pl --taxonomy-type <taxonomy_type> --taxonomy <taxonomy_file> --output <output_file> Step 3 : Assign the reads perl tango.pl --taxonomy <preprocessed_taxonomy> --matches <matches_file> [--q-value <q_parameter>] [--output <output_file>]