SWAPHI-LS: Alignment on Xeon Phi Cluster Icon

SWAPHI-LS: Alignment on Xeon Phi Cluster

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Smith-Waterman long DNA sequence alignment on Xeon Phi clusters

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Description

The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host.

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Additional Project Details

Intended Audience

Science/Research

User Interface

Console/Terminal, Command-line

Programming Language

C++

Registered

2014-03-18

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