SpliceGrapher

Brought to you by: asa_benhur, rogersma

Last Update: 2019-04-24

Get an email when there's a new version of SpliceGrapher

SpliceGrapher predicts alternative splicing patterns and produces splice graphs that capture in a single structure the ways a gene's exons may be assembled. It enhances gene models using evidence from next-generation sequencing and EST alignments.

Features

splice graph prediction
splice junction prediction using support-vector machines
splice graph visualization

Project Activity

See All Activity >

Follow SpliceGrapher

SpliceGrapher Web Site

Other Useful Business Software

Try Google Cloud Risk-Free With $300 in Credit

No hidden charges. No surprise bills. Cancel anytime.

Use your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.

Start Free

Rate This Project

User Reviews

Be the first to post a review of SpliceGrapher!

Additional Project Details

Registered

2011-03-28

Report inappropriate content

Try Google Cloud Risk-Free With $300 in Credit

No hidden charges. No surprise bills. Cancel anytime.

Use your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.

Start Free

Recommended Projects

PASA
The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites.
Audacity
A free multi-track audio editor and recorder
HTML++
Object-oriented generation of HTML code on .NET 4 Client Profile
RNASeq-MATS
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http://rnaseq-mats.sourceforge.net.
OGB
Benchmark datasets, data loaders, and evaluators for graph machine