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Spaced Words Projection (SWeeP), is an application tool capable of generate phylogenetic trees from a large pool of sequences in a reasonably amount of time.
It's the method implementation based on an alignment-free technique, capable of represent biological sequences using relatively small vectors while preserving inter-sequence comparability.
Features
- Multifasta SWeeP converter
- SWeeP matrix as a vector small representation of each sequence
- Phylogenetic tree based on NeighborJoin method
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