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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| data | 2020-04-30 | ||
| README.md | 2020-04-30 | 1.3 kB | |
| nnmfgo_loo_bioinf.ipynb | 2020-04-30 | 22.8 kB | |
| Totals: 3 Items | 24.1 kB | 0 | |
NNMF-GO
Version: 0.1
Update: 2020-04-29
Description
NNMF-GO: a novel method for inferring annotations based on non-negative matrix factorizarion (NNMF) of expression and GO similarities.
This is a distribution of the source code used in:
L. Di Persia, A.L. Arce, D.H. Milone, G. Stegmayer, "Improving prediction of GO annotations from expression data with non-negative matrix factorization", under review (2020).
Running in a Colab
Using a Colaboratory notebook makes it easier to run the scripts, since the code is executed on a server with the required computational power and software prerequisites. Download the source notebook nnmfgo_loo_bioinf.ipynb and upload it to a Google Drive account. Then, the notebook file can be opened from Google Drive web, using the option "Open with Google Colaboratory". A notebook will be opened in a new tab, with further instructions to run the experiment.
Data
Download all data and save it in the same folder as the source notebook, in data/loo.
Licence: This project is licensed under the GNU General Public Licence.
Acknowledgments: Thanks to NVIDIA Corporation for the donation of several Titan Xp GPUs used for this research.