sourcesinc Files

deepSOM for high class-imbalance in pre-miRNA prediction
G. Stegmayer, C. Yones, L. Kamenetzky, D. H. Milone
http://www.sinc.unl.edu.ar/

All datasets can be downloaded from:
http://sourceforge.net/projects/sourcesinc/files/deepSOM/data/

For a single cross validation test download:
- k10arabidopsis.zip (35 MB)
Unzip CSV files in data/k10 and run: xval_test

For a full cross validation test download:
- k10animals.zip (229 MB)
- k10arabidopsis.zip (35 MB)
- k10human.zip (84 MB)
- k10plants.zip (141 MB)
Unzip CSV files in data/k10 and run: xval_test(inf)

For delta miRbase test download:
- animals_fulldataset.zip (22 MB)
- plants_fulldataset.zip (14 MB)
Unzip CSV files in data/ and run: delta_tests
For test with plants dataset run: delta_tests(nan)

Directory structure:
deepSOM
| .README          (this file)
| .detal_test.m    (main script for delta miRBase test)
| .xval_test.m     (main script for cross validation test)
|--data            (datasets for training and test models)
|  | .README       (details about default directory structure for data)
|--models          (source code of deepSOM models and auxiliary scripts)
|--resuls          (output results)
\--somtbx          (original SOM toolbox to train a SOM)