SOAP3-DP Files

Fast, Accurate and Sensitive GPU-based Short Read Aligner

Brought to you by: aquaskyline, chunlaw

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size	InfoDownloads / Week
Parent folder
soap3-dp-2.3.177-cuda5.5-linux.tar.gz	2014-03-26	2.1 MB	1
soap3-dp-2.3.177-cuda5.5-linux-LowMem-AmazonEC2.tar.gz	2014-03-26	2.1 MB	0
soap3-dp-2.3.177-cuda5.5-avx-linux.tar.gz	2014-03-26	2.1 MB	0
soap3-dp-2.3.177-cuda4.2-linux.tar.gz	2014-03-26	2.1 MB	0
soap3-dp-2.3.177-cuda4.2-linux-LowMem-AmazonEC2.tar.gz	2014-03-26	2.1 MB	0
soap3-dp-2.3.177-cuda4.2-avx-linux.tar.gz	2014-03-26	2.1 MB	0
Totals: 6 Items		12.6 MB	1

GitHub

Latest versions available at: https://github.com/aquaskyline/SOAP3-dp

Source: README.md, updated 2015-03-17

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.

Start Free

Photo and Video Editing APIs and SDKs

Trusted by 150 million+ creators and businesses globally

Unlock Picsart's full editing suite by embedding our Editor SDK directly into your platform. Offer your users the power of a full design suite without leaving your site.

Learn More

Recommended Projects

BBMap
This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: ...
erne
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm),...
BarraCUDA Fast Short Read Aligner
Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
CUSHAW2: Parallel Gapped Read Alignment
CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both...
Subread
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was...

SOAP3-DP Files

Fast, Accurate and Sensitive GPU-based Short Read Aligner

Get an email when there's a new version of SOAP3-DP

GitHub