SOAP3-DP Icon

SOAP3-DP

Fast, Accurate and Sensitive GPU-based Short Read Aligner

Add a Review
1 Download (This Week)
Last Update:
Download soap3-dp-2.3.172-cuda4.2-linux-Amazo…gz
Browse All Files
BSD Linux

Screenshots

Description

Latest Code on GitHub:
https://github.com/aquaskyline/SOAP3-dp

SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously. Compared with widely adopted aligners including BWA, Bowtie2, SeqAlto, CUSHAW2, GEM and GPU-based aligners BarraCUDA and CUSHAW, SOAP3-dp was found to be two to tens of times faster, while maintaining the highest sensitivity and lowest false discovery rate (FDR) on Illumina reads with different lengths. SOAP3-dp natively supports BAM file format and provides the same scoring scheme as BWA, which enables it to be integrated into existing analysis pipelines.

Citation: Luo R, Wong T, Zhu J, Liu C-M, Zhu X, et al. (2013) SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner. PLoS ONE 8(5): e65632. doi:10.1371/journal.pone.0065632

SOAP3-DP Web Site

KEEP ME UPDATED

Other Useful Business Software

The Leading Provider of Business VoIP Phone Systems Icon

Award-Winning Business VoIP Phone System

The Leading Provider of Business VoIP Phone Systems Icon
1 of 5 2 of 5 3 of 5 4 of 5 5 of 5
62 Reviews
  • Unlimited Calling, Faxing, Video Conferencing
  • 24/7 U.S Based Customer Support
  • Super Reliable, Simple to Use
Write a Review

User Reviews

Be the first to post a review of SOAP3-DP!

Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

C++, C

Registered

2013-05-31

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

No, thanks