The Systems Biology Simulation Core Library provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project and can be used on every operating system for which a Java Virtual Machine is available. Please note that this project does not contain any user interface, neither a command-line interface, nor a graphical user interface. This project has been developed as a pure programming library. To support the MIASE effort, it understands SED-ML files. Its abstract type and interface hierarchy facilitates the implementation of further community standards, such as CellML.

When using this library, please cite: http://www.biomedcentral.com/1752-0509/7/55.

Features

  • Numerical simulation
  • Ordinary differential equation solver
  • Time-course analysis
  • Systems Biology Markup Language
  • Application programming interface

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Additional Project Details

Languages

English

Intended Audience

Developers, Education, Healthcare Industry, Science/Research

User Interface

Non-interactive (Daemon)

Programming Language

Java

Registered

2011-08-11