Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system.
By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines.
New functions:
Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders.
An alert email will be sent to your email address when the job is done. (You will need to modify the source code to change the content to meet your special needs)

Run-time information will be displayed in a JAVA output window.

Project Samples

First window Tophat-shell system summary Cuffdiff-shell runtime information

Project Activity

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Categories

Bio-Informatics

License

Affero GNU Public License

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Additional Project Details

Operating Systems

Cygwin, Linux, BSD

Languages

English

Intended Audience

Developers, End Users/Desktop

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2012-09-05
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