BarraCUDA Fast Short Read Aligner download

Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.

Features

Fixed problems with compiling the software in Ubuntu 16.04
Tweak: SAMPE 8-core limit is now lifted
FM-index sequencing read mapper software using NVIDIA CUDA acceleration
Outputs in SAM format for downstream analyses
Requires NVIDIA graphics card with compute capability 3.5 or above and at least 1GB VRAM
Requires NVIDIA CUDA SDK toolkit 6.x or above and NVIDIA driver 340 or above
BarraCUDA is published on BMC Research Notes 2012, 5:27, doi:10.1186/1756-0500-5-27
Paper URL: http://www.biomedcentral.com/1756-0500/5/27
This project is supported by the CUDA centre of excellence at Cambridge University

Project Samples

Screenshot 4: Genomic view compared to MAQ and BWA

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3), MIT License

Follow BarraCUDA Fast Short Read Aligner

BarraCUDA Fast Short Read Aligner Web Site

Other Useful Business Software

Resolve Support Tickets 2x Faster with ServoDesk

Full access to Enterprise features. No credit card required.

What if You Could Automate 90% of Your Repetitive Tasks in Under 30 Days? At ServoDesk, we help businesses like yours automate operations with AI, allowing you to cut service times in half and increase productivity by 25% - without hiring more staff.

Try ServoDesk for free

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C, C++

Related Categories

C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2009-10-23

Similar Business Software

MEGA

MEGA (Molecular Evolutionary Genetics Analysis) is a powerful and user-friendly software suite designed for analyzing DNA and protein sequence data from species and populations. It facilitates both automatic and manual sequence alignment, phylogenetic tree inference, and evolutionary hypothesis...

See Software
Galaxy

Galaxy is an open source, web-based platform for data-intensive biomedical research. If you are new to Galaxy start here or consult our help resources. You can install your own Galaxy by following the tutorial and choosing from thousands of tools from the tool shed. This instance of Galaxy is...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software
BaseSpace Sequence Hub

Data management and simplified bioinformatics for labs getting started and for rapidly scaling next-generation sequencing (NGS) operations. As a key component of the BaseSpace Suite, BaseSpace Sequence Hub is a direct extension of your Illumina instruments. Encrypted data flow from the...

See Software
Illumina DRAGEN Secondary Analysis

The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data. Graph reference genome and machine learning driving unprecedented accuracy. Provides ultra-efficient workflow; can fully process a 34x whole human genome in ~30...

See Software