ScreenSifter can help you in managing all your RNAi screens related projects in organized fashion. ScreenSifter, to perform the sequential, user friendly, guided, and advanced statistical analyses of RNAi screening results. User can upload their raw signal intensities and will avail complete quality control of screen, hit selection, plotting of hit genes with gene ontology, comparing of replicates or comparing of channels. In addition, ScreenSifter has visualization tools to plot specific genes or gene groups in the screen data. ScreenSifter also provides Gene Set Enrichment Analysis (GSEA), protein-protein interaction directly on the plot.

Publication:
ScreenSifter: analysis and visualization of RNAi screening data
Pankaj Kumar, Germaine Goh, Sarawut Wongphayak, Dimitri Moreau and Frédéric Bard

BMC Bioinformatics. 2013 Oct 3;14(1):290.
http://www.biomedcentral.com/1471-2105/14/290/abstract

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Categories

Bio-Informatics

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Additional Project Details

Intended Audience

Healthcare Industry, Science/Research, End Users/Desktop

User Interface

wxWidgets

Programming Language

Python

Database Environment

SQLite

Registered

2012-09-24