3DScape is the first plug-in which enables three-dimensional network visualization in Cytoscape. 3DScape features include accessing graph appearance, layout algorithm, and animation effects on a series of expression data.

Features

  • Convert Cytoscape network view to a 3D, retaining the color, size, and shape of nodes.
  • Three-dimensional layout using Fruchterman-Reingold (Fruchterman et al., 1991), Fast Multipole Multilevel Method (FM3) (Hachul et al., 2004), and Span Tree algorithms.
  • Network edges can be rendered in gradient heat map colors, with glowing effect.
  • Animation loops from time points of a series of expression data.

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Additional Project Details

Registered

2011-03-25
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