Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

Features

  • Documentation available
  • Examples available
  • Single-Cell Analysis in Python
  • It includes preprocessing, visualization, clustering, trajectory inference
  • The Python-based implementation efficiently deals with datasets of more than one million cells

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Categories

Machine Learning

License

BSD License

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Programming Language

Python

Related Categories

Python Machine Learning Software

Registered

2024-08-13