SBEToolbox (Systems Biology and Evolution Toolbox) is being developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network. Some of its features include (but not limited to) algorithms to create random networks (small-world, ring lattice etc..), deduce clusters in the network (MCL, mCode, clusterOne) etc...

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PROJECT MIGRATED TO GITHUB FOR FUTURE UPDATES: https://github.com/biocoder/SBEToolbox/releases
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Reference ( In Press ):
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Konganti K, Wang G, Yang E, Cai JJ* (2013). SBEToolbox: a Matlab toolbox for biological network analysis. Evolutionary Bioinformatics, 8:1-15

Features

  • Create random networks (Small World, Erdös - Rényi, Ring Lattice)
  • Import network information in various formats such as SIF, PAJEK and TAB delimited
  • Get various statistics about the current network of interest (Degree Centrality etc...)
  • View networks using Protovis add on or using Cytoscape
  • Apply different algorithms (MCL, mCode, clusterOne) for module detection
  • Extract largest connected network

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Categories

Bio-Informatics

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Additional Project Details

Intended Audience

Advanced End Users, End Users/Desktop, Science/Research

User Interface

Console/Terminal, Grouping and Descriptive Categories (UI)

Programming Language

MATLAB

Registered

2012-05-14