The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

Project Samples

Project Activity

See All Activity >



Other Useful Business Software

Open source. Easy to use. Proven. Complete. Open source. Easy to use. Proven. Complete. Icon
Open source. Easy to use. Proven. Complete. Icon

End to end big data that enables you to spend less time formatting data and more time analyzing it.

Discover HPCC Systems - the truly open source big data solution that allows you to quickly process, analyze and understand large data sets, even data stored in massive, mixed-schema data lakes. Designed by data scientists, HPCC systems is a complete integrated solution from data ingestion and data processing to data delivery. The free online introductory courses and a robust developer community allow you to get started quickly.

Rate This Project

Login To Rate This Project

User Ratings

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 3 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5

User Reviews

  • Even on probably most popular among science/business distribution - Centos/Scientific Linux - and TPP ver. 4.8, 5.0, 5.1 they all fail to compile, only 4.7 managed to compile successfully. I've tried different compilers/toolsets and all versions above 4.7 do not compile. My thoughts... I'm no programmer but I thought before that TPP developers might live on a different planet, planet Windows but, I did not suppose that planet is in a far far away galaxy! How could you release anything(not to mention carry on developing this way) without testing and proofing your software? Only, if you do not give a toss? Unfortunately this seems to be a trend when scientist decide to do programming. Also, scientist who do not understand open source? What kind of a science it that??

  • A wonderful tool no doubt, but the project has left Linux users in the lurch. Version 4.8.0 has been a headache to install (see below *) and looking at 5.0.0, it looks like it's back to square one troubleshooting! (*) had to revert to gcc 4.8, which is not even available as package anymore in modern build, change "endform to end_form" in a perl module, changed paths in Proteowizard makefile, added "." to paths in Makefile, and quite a lot of the Apache config had to be adjusted !

    1 user found this review helpful.
  • Don't use TPP 4.8 setup it is buggy.

    1 user found this review helpful.
  • great app, works nicely

  • awesome!!

Read more reviews >

Additional Project Details



Intended Audience


User Interface

Web-based, Command-line

Programming Language

Perl, C++, C, Java